MidgeBase gene description page [Pn.06271]
Outline
| Gene ID | Pn.06271 |
| Type | Protein coding gene |
| Scaffold | PnScaf5626 |
| Start | 29953 |
| End | 37270 |
| Direction | - |
Sequence
Transcript: 1065 (bp)
ATGACGCATCATCAGCAGATCAACTGTCACGAAGACATTCATCCCATATTAGCAACAAACATAAAGAAACAAAATTATTCGCACTGCGTGGGCTGCGGAGGACAAATTCACGATCAGTACATTCTGCAGGTTGCGCCGGACCTCGAGTGGCACGCGGCATGCCTGAAGTGCCAGGAGTGCCGTCAATTCCTCGACGAGAGCTGCACGTGCTTTGTGCGCGACGGCAAGACCTACTGCAAGCGCGACTACGTTCGCTTGTTCGGCACCAAATGTGATAAATGCGGGAATTCGTTCTGTAAAAACGACTTTGTGATGCGAGCTAAAACTAAAATTTACCATATCGAGTGCTTTCGGTGCACTGCATGCTCCCGTCACCTCAATCCGGGTGACGAATTTGCATTGCGAGATGGCAATTCGCTCTTCTGCAAAATGGACAACGATGCACTTGATAAATTAGCAAATTCTGAAATGGATTCATCAGGAAATGAATTCCCAGACGCAAATTGCAAACTGACGGGTAGCAACAATAATTTAAGCGAGTTCGGATCCATGTCGGAATCTGAAAGTGAGTCCGGATCACACAAAAATATGCGTATTCGAGGCAAACCGCTAGGCTCAAATGACGGGAAAACACGTGTGAGAACGGTTCTCAATGAGAAACAACTGCACACACTCACAACATGGTTTCAAATGAATCCGAAGCCCGACGCCCTCATGAAAGAGCAGCTGGTGGAGATGACGGGGCTTTCGCCACGAGTCATCCGAGTGTGGTTTCAGAACAAGCGCTGCAAGCAGAACAAGAAGGCAAATCAATTAAAGATTCAGATGGAGCAGGAGAAGGAAATGAAGCAAATTGGTTATGGACGAATGCACGGCATTCCGTTAATTGCAACGAGCCCCATTCGCAACGAAGAGCTGCCGCTCAACGTGCAGAGTTTCGAAGTCTCATCATTCCAGCCTCAGTGGAAAATGATTTCCGATCTCGCCATACATGCCGATGCGAAGAACAGCGAGATGATGAATTCACCGACATGCATTGATATTGTTAATCAGGTAAACATATAT
Protein: 355 (aa)
MTHHQQINCHEDIHPILATNIKKQNYSHCVGCGGQIHDQYILQVAPDLEWHAACLKCQECRQFLDESCTCFVRDGKTYCKRDYVRLFGTKCDKCGNSFCKNDFVMRAKTKIYHIECFRCTACSRHLNPGDEFALRDGNSLFCKMDNDALDKLANSEMDSSGNEFPDANCKLTGSNNNLSEFGSMSESESESGSHKNMRIRGKPLGSNDGKTRVRTVLNEKQLHTLTTWFQMNPKPDALMKEQLVEMTGLSPRVIRVWFQNKRCKQNKKANQLKIQMEQEKEMKQIGYGRMHGIPLIATSPIRNEELPLNVQSFEVSSFQPQWKMISDLAIHADAKNSEMMNSPTCIDIVNQVNIY
| Type | Start | End | Length |
| CDS |
29956 |
30237 |
282 |
| CDS |
30305 |
30410 |
106 |
| CDS |
30645 |
30765 |
121 |
| CDS |
32435 |
32605 |
171 |
| CDS |
32727 |
33047 |
321 |
| CDS |
37207 |
37270 |
64 |
| intron |
30238 |
30304 |
67 |
| intron |
30411 |
30644 |
234 |
| intron |
30766 |
32434 |
1669 |
| intron |
32606 |
32726 |
121 |
| intron |
33048 |
37206 |
4159 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001961576 |
GF14867 [Drosophila ananassae] gb|EDV30797.1| GF14867 [Drosophila ananassae] |
1e-129 |
| InterPro |
IPR001781 |
Zinc finger, LIM-type |
|
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF08394.5 |
Archaeal TRASH domain |
0.46 |
| Pfam |
PF05920.6 |
Homeobox KN domain |
0.001 |
| Pfam |
PF00412.17 |
LIM domain |
3.1e-28 |
| Pfam |
PF00046.24 |
Homeobox domain |
1.4e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP010209 |
| P. vanderplanki |
Pv.02658 |
| P. vanderplanki |
Pv.02659 |
| H. sapiens |
ENSP00000290759 |
| D. plexippus |
DPOGS206411PA |
| C. quinquefasciatus |
CPIJ012632 |
| A. aegypti |
AAEL001500 |
| S. invicta |
SI2.2.0_09376 |
| A. mellifera |
GB12465-PA |
| B. mori |
BGIBMGA013872-TA |
| M. musculus |
ENSMUSG00000042258 |
| H. sapiens |
ENSP00000421737 |
| D. melanogaster |
FBgn0003896 |
| N. vitripennis |
NV18000-PA |
| P. vanderplanki |
Pv.02657 |
| H. sapiens |
ENSP00000230658 |
| H. sapiens |
ENSP00000422676 |
| T. castaneum |
TC009339 |
| P. humanus |
PHUM202210-PA |