MidgeBase gene description page [Pn.06206]
Outline
| Gene ID | Pn.06206 |
| Type | Protein coding gene |
| Scaffold | PnScaf5543 |
| Start | 10055 |
| End | 13666 |
| Direction | - |
Sequence
Transcript: 2235 (bp)
ATGTCGCTCTGCACGAGGCAGCTCTTGCGGAAGCCATGGTCCTCGAACAGCACCGATCCGAGCGAGTCAAGTGTCGACGAGCTCGAGCAAGATTGCAGCAACGGCAGCAGAAAAATAATTATTATCGTTTGTTTCGCGAGGCGACCTCGCGATCCCGCCGCCATCGAGCGCTCAAATCTCGTCAACATTTGCAAGCTGGTGGTGAAGGAGCTCCTCGAGCAATCCCTGCGCTACGGCCGTCAATTAGATTCCGATCATCTTCCACTGCAGCACTTCTTCATCATTTTGGAGCACATTTTGAGGCACGGCTTGAAGCCGAAGAAGGGCCTGCTCGGTCCGAAAAAGGAGCTGTGGGACTTGCTGCAGAGCACGGAAAAATACTGCTCAGAGGCGCAGGATGTGACTTCAACTATTCGCGACTTGCCGACCGTCCGCACACAGACGGGACGCTCGCGCGCTTGGCTTCGCTTGGCTTTGATGCAAAAGAAACTCGCCGACTACTTGCAGGCGCTGATCGAGCACAAAAATGAAATTCTCGTCGAATATTACGAGCCGCACGCGCTCATGCTGAGCGACGAAATCGTCGTCATCATGGGCATTTTGGTGGGACTCAACGTCATCGACTGCAATTTGTGCGTGAAGGGAGAGGATCTCGACTCGCAGCAGGGCGTCATTGATTTTTCGCTCTACTTGCGCTCGAGCTCGCGAACCAGCCCGGAGAATGAGCAACCGGCGATCGAGGGCGGAAACATGACTGCCGTTCTCGACCAGAAGAACTACATCGAGGAATTGAATCGGCATTTGAATGCAACGGTAGCGAATCTCCAGCAGAAAACGGAACAGCTGACCACTACGAATGCGCTGATGAAGGAAGACTTGGCGATCGCAAGAAACAGTCTTCTGACCCTACAGGCTGAAAACGCGGCGCTTCGGCAAAGTCAAAACGCGAATCAGCACATCGTTGACCGCGCAAACGTGCTGGATCGAGTCGATCCCGAAATGGCCGAGACACTCGCCGAGGAGAGGAAGAAGCGTCAGGAGATGGAGCGGGAACTGGAATTGCAAGTGTGCCTAAAAGCCGAAACCGAGATGGCAATGAAATTGCTCGAAAAGGACATTCACGAGAAACAAGACACGATCGTTTCGCTGCGAAGACAACTCGAAGACATCAAGCAGATCAACTTGGAGATGTACAAGAAACTGCAGGAGTGCGAGTTTGAGCTAACACAGAAGGGCGAGATGGTGGAGCGGTTGCAGGCGAAGGCGTCGAGCATCGGAAGAATTCTGACGAGTTTAGAAAAGAAGTACAGTAATACGCGTGACGAGAGTAAGGACATGAAGAAGTCGCCGTCGGGCTCGCAACTCGGCCATCCGCCGAACAAACGCGCATATCTTAAAATTCAGCCGATTCCGCCGTTCAACGCCAACAGAGTCAAAAAGTCACCGTCGTCGGATCCTACGATGACGCCAGAAGTCGAGGCGCAACCTGTGCAGACACTAACCGAGGAGGCGGAGGAAAAAGAGGCTGAGACTCCCGCAGAGTGCGAGTCGTCGCTTAAACACAAAACCGATCTGCTCACAAAGCTCGAGAGTCAGCGCGAATCAATGTCGAGCGCAATAATGCAATTAGAGAAAAAGCACTCTTCGGATCTCGCGTCGTTCAAGTCGCTGGAGGATGCGAGCAAGGCATTGACCTCGCAGATTGTCATCAGCGAAGAGGGCCGGTCGAGGGCCGAAGCCGATCTGAGGATTGAGCGCGAATGGCGCAGTGCGCTGCAGGCAAAAGAGCTTGAATACAAGGAGGCGATATCGAAGCTGCAACTGAAAATCACGCAGCAGGCCGAGGAATTAAAGAAGTTTGAAAAGACAAAAACCGAGCTGGAGCGGCTTCGCAAGAAATACAACGAGGATCAGCAGACGCTCGAGGAGCTGGGCATTCAACTCAGCATGACGAAGCTCCAAGTGTCGGAGCTGAAAGAGCGCTCGAAAATCGCCGAGGAGATGGGAAACGGAAAGATTTTGGCCTCCTCTGAATGGACACCTGACGAGTCGGCAACCGCCTGTCACTGCTGCAGTTCAACGTTCTCGCTGACGAAGAGAAAACATCACTGCAGGAGCTGCGGAAATGTGGTGTGCAAGAGCTGTTCGGATCATGTTTTACCGCTCGAGGAGAAGAATGGAGTATTAGGCAAGCCCGTGAGAGTATGTGATACTTGCTGGCAGACGCATGTTAAT
Protein: 745 (aa)
MSLCTRQLLRKPWSSNSTDPSESSVDELEQDCSNGSRKIIIIVCFARRPRDPAAIERSNLVNICKLVVKELLEQSLRYGRQLDSDHLPLQHFFIILEHILRHGLKPKKGLLGPKKELWDLLQSTEKYCSEAQDVTSTIRDLPTVRTQTGRSRAWLRLALMQKKLADYLQALIEHKNEILVEYYEPHALMLSDEIVVIMGILVGLNVIDCNLCVKGEDLDSQQGVIDFSLYLRSSSRTSPENEQPAIEGGNMTAVLDQKNYIEELNRHLNATVANLQQKTEQLTTTNALMKEDLAIARNSLLTLQAENAALRQSQNANQHIVDRANVLDRVDPEMAETLAEERKKRQEMERELELQVCLKAETEMAMKLLEKDIHEKQDTIVSLRRQLEDIKQINLEMYKKLQECEFELTQKGEMVERLQAKASSIGRILTSLEKKYSNTRDESKDMKKSPSGSQLGHPPNKRAYLKIQPIPPFNANRVKKSPSSDPTMTPEVEAQPVQTLTEEAEEKEAETPAECESSLKHKTDLLTKLESQRESMSSAIMQLEKKHSSDLASFKSLEDASKALTSQIVISEEGRSRAEADLRIEREWRSALQAKELEYKEAISKLQLKITQQAEELKKFEKTKTELERLRKKYNEDQQTLEELGIQLSMTKLQVSELKERSKIAEEMGNGKILASSEWTPDESATACHCCSSTFSLTKRKHHCRSCGNVVCKSCSDHVLPLEEKNGVLGKPVRVCDTCWQTHVN
| Type | Start | End | Length |
| CDS |
10058 |
10113 |
56 |
| CDS |
10170 |
10234 |
65 |
| CDS |
10446 |
10922 |
477 |
| CDS |
11169 |
11266 |
98 |
| CDS |
11543 |
11875 |
333 |
| CDS |
11983 |
12382 |
400 |
| CDS |
12685 |
13345 |
661 |
| CDS |
13522 |
13666 |
145 |
| intron |
10114 |
10169 |
56 |
| intron |
10235 |
10445 |
211 |
| intron |
10923 |
11168 |
246 |
| intron |
11267 |
11542 |
276 |
| intron |
11876 |
11982 |
107 |
| intron |
12383 |
12684 |
302 |
| intron |
13346 |
13521 |
176 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001996115 |
GH14313 [Drosophila grimshawi] gb|EDV90773.1| GH14313 [Drosophila grimshawi] |
0.0 |
| InterPro |
IPR000306 |
Zinc finger, FYVE-type |
|
| InterPro |
IPR017455 |
Zinc finger, FYVE-related |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR004012 |
RUN |
|
| InterPro |
IPR011011 |
Zinc finger, FYVE/PHD-type |
|
| Gene Ontology(MF) |
GO:0046872 |
metal ion binding |
|
| Pfam |
PF04582.7 |
Reovirus sigma C capsid protein |
4.3 |
| Pfam |
PF01047.17 |
MarR family |
0.19 |
| Pfam |
PF02759.14 |
RUN domain |
2.2e-28 |
| Pfam |
PF01363.16 |
FYVE zinc finger |
9.2e-21 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000433197 |
| H. sapiens |
ENSP00000373420 |
| H. sapiens |
ENSP00000377094 |
| P. humanus |
PHUM530210-PA |
| H. sapiens |
ENSP00000377087 |
| T. castaneum |
TC000321 |
| B. mori |
BGIBMGA006374-TA |
| H. sapiens |
ENSP00000366200 |
| D. plexippus |
DPOGS210947PA |
| H. sapiens |
ENSP00000390025 |
| H. sapiens |
ENSP00000443652 |
| M. musculus |
ENSMUSG00000029291 |
| P. vanderplanki |
Pv.12456 |
| H. sapiens |
ENSP00000382151 |
| A. mellifera |
GB11250-PA |
| H. sapiens |
ENSP00000404986 |
| A. aegypti |
AAEL002419 |
| H. sapiens |
ENSP00000325594 |
| C. quinquefasciatus |
CPIJ009735 |
| H. melpomene |
HMEL006110-PA |
| M. musculus |
ENSMUSG00000020375 |
| A. gambiae |
AGAP003431 |
| H. sapiens |
ENSP00000370394 |
| H. sapiens |
ENSP00000399771 |
| S. invicta |
SI2.2.0_16486 |
| M. musculus |
ENSMUSG00000020070 |
| H. sapiens |
ENSP00000226328 |
| H. sapiens |
ENSP00000426117 |
| H. sapiens |
ENSP00000425400 |
| H. sapiens |
ENSP00000425574 |
| D. melanogaster |
FBgn0051064 |
| N. vitripennis |
NV15480-PA |