MidgeBase gene description page [Pn.06166]
Outline
| Gene ID | Pn.06166 |
| Type | Protein coding gene |
| Scaffold | PnScaf5491 |
| Start | 32559 |
| End | 35618 |
| Direction | - |
Sequence
Transcript: 1977 (bp)
ATGACTGGTCTTCTCAAGTGTTCGTCGCTTCTAGCGAGAAATACACAGAATCTACTCAAGTCGCTCTCGCTTACATCGACACGAAATCTTCACTTTACTGTGGGAAATAATAACTCGAAGCCAAATCCGAATGCCATCTCGAATGCCTATCAAGTGGTTGATCACGAATTCGATGCTGTCGTCGTGGGTGCCGGTGGAGCCGGTTTGCGCGCAGCATTTGGTCTTGTTGCCGAGGGCTTCAAGACTGCCGTAGTTACTAAGCTCTTTCCAACTCGATCACACACAGTCGCCGCCCAGGGTGGCATCAATGCCGCGCTTGGGAACATGGAGCCCGATGACTGGAAGTGGCACATGTACGATACAGTCAAGGGTTCAGACTGGCTTGGCGATCAAAACTCCATTCATTACATGACCCGCGAAGCACCAAAGGCCGTAATTGAGCTGGAAAACTACGGAATGCCTTTCTCGCGAACCCCCGACGGCAAGATCTACCAGCGTGCCTTCGGTGGACAGAGTTACAACTACGGAAAGGGAGGACAGGCGCATCGCTGCTGCTGTGTCGCTGACAGAACTGGTCACTCACTTCTACACACACTCTACGGTCAATCTCTAAGCTATGATTGCAATTACTTTATCGAATATTTTGCGATGGACCTGATTATGCAAAACGGCGAATGTCACGGTGTTATCGCCTTAAACTTGGAGGATGGCACTATTCATCGTTTCCGAGCAAAGAATACAGTTCTGGCGACGGGCGGCTATGGCAGAGCATATTTCTCGTGCACATCTGCGCACACATGCACTGGCGATGGCACTGCAATGGTTGCACGTGCAGGCCTCCCCTCAGAGGACTTGGAATTTGTGCAATTCCACCCGACTGGCATTTATGGAGCAGGCTGCCTGATCACCGAGGGATGTCGCGGCGAGGGCGGCTACTTGATCAACTCACAAGGTGAACGCTTCATGGAGCGCTACGCACCGGTCGCTAAGGACTTGGCCTCACGTGACGTCGTCTCGCGCTCAATGACAATCGAAATCCGCGAAGGTCGCGGCTGCGGTCCCGATAAAGATCACGTCTACCTGCAATTGCATCACTTGCCTCCAGAACAACTCGCACAGCGTCTGCCCGGCATCTCAGAAACGGCAATGATCTTCGCCGGTGTCGACGTCACTCGCGAACCTATTCCCGTTCTTCCCACCGTTCACTACAACATGGGAGGCGTCCCGACAAACTACAAGGGTCAGGTTTTGACTATCGACAAGCAAGGCGAAGATGTGATTGTGCCGGGTCTTTACGCTTGCGGCGAAGCAGCGTGCTCGTCCGTTCACGGCGCTAACCGCTTGGGCGCAAACTCGCTCTTGGATTTGGTCGTTTTCGGCCGTGCCTGCGCGTTGACGATTGCCGAGGAGAACAAGCCGGGCGAAAAGATTCCAGCACTTCCCGACAATGCTGGCGAGGAGTCGGTCGCCAACTTGGACTGGGTCAGAAATGCAAACGGCGCCGTTCCGACTGCAGATTTGCGCTTGACGATGCAAAAGACCATGCAGAACCACGCAGCCGTTTTCCGCGAGGCACAGACCTTGCAGGAGGGAGTACAAAAGATGTCGGGCATCTACAAGCAAATTAAGGACGTCAAAGTGTCGGACCGTTCGCTGATCTGGAATTCTGACTTGGTCGAGACCCTCGAGCTGCAGAATCTGTTGCTGAACGCCAACATGACAATGGTCGCCGCCGAGAACCGCAAAGAGTCGCGCGGTGCGCACGCTCGTGAAGATTTCAAAGACCGCATCGACGAATACGACTACAGTAAGCCGATTGAGGGACAACAGAAGAAGCCAATCACAGAGCACTGGAGGAAGCACACGCTAACATGGATTGACAAGGACTCGGGCGACGTAAAGATCGACTACCGGCCAGTTATTGATGAAACACTCGACGCAGAGTGCAAGACTGTTCCACCAGCCATTCGTTCATAT
Protein: 659 (aa)
MTGLLKCSSLLARNTQNLLKSLSLTSTRNLHFTVGNNNSKPNPNAISNAYQVVDHEFDAVVVGAGGAGLRAAFGLVAEGFKTAVVTKLFPTRSHTVAAQGGINAALGNMEPDDWKWHMYDTVKGSDWLGDQNSIHYMTREAPKAVIELENYGMPFSRTPDGKIYQRAFGGQSYNYGKGGQAHRCCCVADRTGHSLLHTLYGQSLSYDCNYFIEYFAMDLIMQNGECHGVIALNLEDGTIHRFRAKNTVLATGGYGRAYFSCTSAHTCTGDGTAMVARAGLPSEDLEFVQFHPTGIYGAGCLITEGCRGEGGYLINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPDKDHVYLQLHHLPPEQLAQRLPGISETAMIFAGVDVTREPIPVLPTVHYNMGGVPTNYKGQVLTIDKQGEDVIVPGLYACGEAACSSVHGANRLGANSLLDLVVFGRACALTIAEENKPGEKIPALPDNAGEESVANLDWVRNANGAVPTADLRLTMQKTMQNHAAVFREAQTLQEGVQKMSGIYKQIKDVKVSDRSLIWNSDLVETLELQNLLLNANMTMVAAENRKESRGAHAREDFKDRIDEYDYSKPIEGQQKKPITEHWRKHTLTWIDKDSGDVKIDYRPVIDETLDAECKTVPPAIRSY
| Type | Start | End | Length |
| CDS |
32562 |
33319 |
758 |
| CDS |
33382 |
33878 |
497 |
| CDS |
34318 |
34470 |
153 |
| CDS |
34569 |
34729 |
161 |
| CDS |
34811 |
35025 |
215 |
| CDS |
35168 |
35306 |
139 |
| CDS |
35565 |
35618 |
54 |
| intron |
33320 |
33381 |
62 |
| intron |
33879 |
34317 |
439 |
| intron |
34471 |
34568 |
98 |
| intron |
34730 |
34810 |
81 |
| intron |
35026 |
35167 |
142 |
| intron |
35307 |
35564 |
258 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_311518 |
AGAP010429-PA [Anopheles gambiae str. PEST] gb|EAA07202.4| AGAP010429-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR011281 |
Succinate dehydrogenase, flavoprotein subunit |
|
| InterPro |
IPR003952 |
Fumarate reductase/succinate dehydrogenase, FAD-binding site |
|
| InterPro |
IPR003953 |
FAD binding domain |
|
| InterPro |
IPR015939 |
Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal |
|
| InterPro |
IPR014006 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
|
| Gene Ontology(BP) |
GO:0006099 |
tricarboxylic acid cycle |
|
| Gene Ontology(BP) |
GO:0022900 |
electron transport chain |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01266.19 |
FAD dependent oxidoreductase |
7.3e-05 |
| Pfam |
PF01494.14 |
FAD binding domain |
0.06 |
| Pfam |
PF07992.9 |
Pyridine nucleotide-disulphide oxidoreductase |
3e-07 |
| Pfam |
PF01134.17 |
Glucose inhibited division protein A |
0.00016 |
| Pfam |
PF06905.8 |
Fas apoptotic inhibitory molecule (FAIM1) |
0.13 |
| Pfam |
PF13738.1 |
Pyridine nucleotide-disulphide oxidoreductase |
0.11 |
| Pfam |
PF00890.19 |
FAD binding domain |
1.2e-127 |
| Pfam |
PF02910.15 |
Fumarate reductase flavoprotein C-term |
5.5e-47 |
| Pfam |
PF03486.9 |
HI0933-like protein |
0.11 |
| Pfam |
PF01946.12 |
Thi4 family |
9.2e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL002503-PA |
| S. invicta |
SI2.2.0_03674 |
| M. musculus |
ENSMUSG00000021577 |
| T. castaneum |
TC006271 |
| C. quinquefasciatus |
CPIJ006167 |
| B. mori |
BGIBMGA012226-TA |
| H. sapiens |
ENSP00000264932 |
| N. vitripennis |
NV12395-PA |
| B. mori |
BGIBMGA009000-TA |
| A. mellifera |
GB17439-PA |
| A. gambiae |
AGAP010429 |
| D. plexippus |
DPOGS203282PA |
| A. mellifera |
GB15847-PA |
| D. plexippus |
DPOGS200427PA |
| D. melanogaster |
FBgn0036222 |
| D. melanogaster |
FBgn0261439 |
| T. castaneum |
TC007374 |
| H. sapiens |
ENSP00000427703 |
| P. vanderplanki |
Pv.12696 |
| H. sapiens |
ENSP00000426514 |
| A. aegypti |
AAEL010608 |
| N. vitripennis |
NV50104-PA |
| P. humanus |
PHUM530140-PA |
| S. invicta |
SI2.2.0_00829 |