MidgeBase gene description page [Pn.06155]
Outline
| Gene ID | Pn.06155 |
| Type | Protein coding gene |
| Scaffold | PnScaf5480 |
| Start | 81 |
| End | 4425 |
| Direction | + |
Sequence
Transcript: 3474 (bp)
ATGTACGAGGACCAGATCACGGTGCTCTTGGGCCACAACGGCGCCGGCAAGACGAGCACGATGTCGATGATCACGGGCATGATCCCGCCCACCTCCGGTACCGCCATCATCAACGGCAAGGACATCCGGCGCGACATCAACGCGATCCGCTCGTCGATCGGCTTCTGTCCGCAGCACAACATTCTCTTCGAGGACTTGACGGTGCGCGAGCACATCACCTTCTACAGCCTGCTCAAGGGCCTCCACAAGGACGACGTCGAGCGGGAGGTCGAGAAGTACGTGAAGCTGCTGAAGCTCGAGAACAAAATCGACGTGCAGGCGCGCGGGCTGTCGGGCGGCATGAAGAGGAAGCTCTCGGTCGGAATCGCTCTGTGTGCCGGCTCGAAGATCGTCCTCTTCGATGAGCCGAGCTCAGGCGTTGATCCGGGCGCCCGGCGAGACCTTTGGGACCTGCTGCAGGCCGAGAAGGGAGGACGGACGATTTTGCTGTCGACGCACTTTATGCTCGAGGCGGACGTGTTGGGCGATCGCATCGCCATCATGTCGAATGGCGTGCTGAAGGCAGTCGGATCGCCCTTTTTCCTCAAGAAGCAATTCGGCGTCGGCTATCACCTGGTGTGTGTCAAAAACGACGCGGCTTGCAGCTCGCTGCCGATAACGGAGCTGCTGAGCAAGTACATACCGGACGTGAAGAAGGAGAGCGAAGTTGGCACCGAGTTGTCGTATCTGCTGGACGACAAGAACGTGTTGGTTTTCCAGAAAATGCTGCGCGACTTGGAGGAGCACTCCGAGGAGCTGAACATCGAGAGCTACGGCATTTCGCTGACGACGCTCGAGGAAGTTTTCTTGAAAGTCGGAACTGACGAGCCGGAGGGAGAAAGCAAGTCGCCGGTAAAACTCAACGGAGTCAAAAATGGTCACGCAAACGAAATGGAGGAGGGCGTAAACTTCTACGCCTACTCGGACACGCTGACGCTGTTGAAAGGCGCGCAGCTGTACATGAACCAGTTCTCGTCGCTTCTCGAGAAGAAAGTGCTCAACTCGTGGCGAAACTTGGCGCTGCTGATAATTCAGATTATCATCCCGATTGCCTTCGTTTCCATCACAATCATCATCGTGAGGAGCTGGGGCGGAAACAAGGACTTGCCAAGGCTGCCACTCACGCTGGACACTTACAGAGTGACACACACCTCGCTCCAAATCGACCCCACCTCCTTCGTCGACTCGATGGAGAACAAGATTTTCGAGAACTACCGCGAGCAGTTCCGCGGCTACCCGAAGCAGTCGATTGCGCTCGAGGTTGTCTTCGGCGACATGGTGGAGCACTACTTGAACAAGTCCAAGGAGTTTCTCGCGCGCGTGAACAGTCGATATTTGTTTGGCGCAACAATCGAGAAATCAAACATAACGGTGTGGTTCAACAATCAGCCTTATCACGCGAGTCCCATCAGCTTATCACTGGTGCACAATGCAATGCTGAAGACCGTGTGCGGAGCCAATTGCTCGATTAAAGTTTCCAACAAACCTCTGCCCTATCGCGCGGAATCAAGGATGATGATGCTGCAAGCGGGCAACAATCTCGGCTTTCAACTGTCATTCAACATCGGCTTTGCGATGGCCTTTGTCGCATCCTTCTTCGTCATTTCCTACATCAAGGAGCGCGTCACAAAGGCAAAACACTTGCAGTTTGTGAGCGGCGTGAGTTCGGTGACCTACTGGAGCAGCGCCTTCGTTTGGGACTATTTTCTGTTCCTGATCATTGCACTCCTCGTCACAGCGACAATCGGCGCTTTCCAGGAAAAAGGCTTCAGCACGTTCGAGCAGCTCTCGCGAATTTATTTCCTTCTCATCATGTTTGGATTTGCCGTCTTGCCTTTCCTCTACATCGCGGCCTTCTTGTTCCAGTCGCCGGCCTCAGGATTCACGAAAATGTCGATAATTTTCATCTTCTTGGGCGTCGCCATGTACACGGTGGTGTTCTCGATGCGATTCGAGGGCTTCAACCTGCGAAACGTAGCCGACACGCTGACGTGGATTTTTCTGGCGGTGCCGCACTTTTCGCTGAGCAACGCCTTCAGCAACATCAATCTCATCAACGTGTTCAAGGAGGTCTGCGACCAGCAGTGCAATCTCCTCGGCATTTGCGACAAGGATAAGCAGTGCGCCTTCAACGCTCGCTGCTGCAACCTCAACTACTTTGCATGGGAGGAGCCGGGCATTTTGCGGAATCTCGTCTACTTCCTCGTCGTGGGAATTTGTGCCTTTTGCGTGTTGTTCCTGATCGAGTTCCGAGTGTTTGAGGTGATTTATTATTACGCGAGGATGGTTTACCGAGCAGTTGCCGGCATGCTGTGCCCACGGTTTGTGAAACGACCGCCGGTGATTAGCGAGGCAGAGGACGAGGACGTCGATGTGAGAGCCGAGAAGGAGAAAATAAACGGCATGCTGACGAATGACTACCAAAACTACAACCTCGTCATGAAGAACGTGTCAAAGTACTACAAGGACTTTCTCGCCGTCAATCAGCTGTGCATCGGTATCGGCTCGTGCGAGTGCTTCGGGCTCCTCGGAATGAACGGAGCCGGAAAGACGTCGACCTTCAAGATGCTCACAGGCGACGCAAAGATCTCAAATGGCGAGGCTTTCGTACAGGGACTAAGTCTGAAGATGAACATGAAGGAAGTTCACAAACGCATCGGCTACTGTCCACAGTTCGATGCCCTAATTGAGGATCTCACTGGAAGAGAAACTTTGAAGCTTTTTGCTCTCTCGAGGGGAATCCCGAAATTTAAAATTAACGATGTCGTGACGAAGCTTGCTGGCGATCTCAATTTTACGAAGCATCTGGACAAGCAGGTGAGAGCCTACAGCGGAGGAAACAAGCGAAAGTTGAGCACAGCCGTGGCACTGCTCGGAAATCCCGTCATCGTCTACTTGGATGAACCAACGACTGGAATGGACGTCGGCAGCAAGAGAAACCTCTGGGACGTGATGTGCAATGTCAGAAATGCAGGGAAAACAATTGTGCTGACATCTCACAGCATGGAGGAGTGTGAGGCGCTCTGCACCCGGCTGGCAATTATGGTGAACGGCCAATTCAAGTGCCTTGGCTCAACTCAGCACTTAAAGTCGAAGTTCGGCGACGGATTTGTACTGACAGTAAAAATTAAGCGAAAAGCTGCGAACTCGAATGGAAACGGCGAAATCATTAGATCTGAGTCTGACGAAATGATTGAGGAGAGAAGCGCACTGAAGGAGTTTGTGAAGACAGAATTCGAAGGAGCGGAGCTGAAAGAGGAATACTACGACCTGTTAACTTTCCATGTGCCATCTCACGAGCTGAAGTGGTCCGAAATTTTCGGCACTCTCGAAAATGCAAAAAGTCGCCTTAACATTGAAGACTACTCAATTGCTCAATCGACTCTCGAACAAATCTTTCTCTCGTTTACAAAGTATCAGCGTCAAACTGATGAC
Protein: 1158 (aa)
MYEDQITVLLGHNGAGKTSTMSMITGMIPPTSGTAIINGKDIRRDINAIRSSIGFCPQHNILFEDLTVREHITFYSLLKGLHKDDVEREVEKYVKLLKLENKIDVQARGLSGGMKRKLSVGIALCAGSKIVLFDEPSSGVDPGARRDLWDLLQAEKGGRTILLSTHFMLEADVLGDRIAIMSNGVLKAVGSPFFLKKQFGVGYHLVCVKNDAACSSLPITELLSKYIPDVKKESEVGTELSYLLDDKNVLVFQKMLRDLEEHSEELNIESYGISLTTLEEVFLKVGTDEPEGESKSPVKLNGVKNGHANEMEEGVNFYAYSDTLTLLKGAQLYMNQFSSLLEKKVLNSWRNLALLIIQIIIPIAFVSITIIIVRSWGGNKDLPRLPLTLDTYRVTHTSLQIDPTSFVDSMENKIFENYREQFRGYPKQSIALEVVFGDMVEHYLNKSKEFLARVNSRYLFGATIEKSNITVWFNNQPYHASPISLSLVHNAMLKTVCGANCSIKVSNKPLPYRAESRMMMLQAGNNLGFQLSFNIGFAMAFVASFFVISYIKERVTKAKHLQFVSGVSSVTYWSSAFVWDYFLFLIIALLVTATIGAFQEKGFSTFEQLSRIYFLLIMFGFAVLPFLYIAAFLFQSPASGFTKMSIIFIFLGVAMYTVVFSMRFEGFNLRNVADTLTWIFLAVPHFSLSNAFSNINLINVFKEVCDQQCNLLGICDKDKQCAFNARCCNLNYFAWEEPGILRNLVYFLVVGICAFCVLFLIEFRVFEVIYYYARMVYRAVAGMLCPRFVKRPPVISEAEDEDVDVRAEKEKINGMLTNDYQNYNLVMKNVSKYYKDFLAVNQLCIGIGSCECFGLLGMNGAGKTSTFKMLTGDAKISNGEAFVQGLSLKMNMKEVHKRIGYCPQFDALIEDLTGRETLKLFALSRGIPKFKINDVVTKLAGDLNFTKHLDKQVRAYSGGNKRKLSTAVALLGNPVIVYLDEPTTGMDVGSKRNLWDVMCNVRNAGKTIVLTSHSMEECEALCTRLAIMVNGQFKCLGSTQHLKSKFGDGFVLTVKIKRKAANSNGNGEIIRSESDEMIEERSALKEFVKTEFEGAELKEEYYDLLTFHVPSHELKWSEIFGTLENAKSRLNIEDYSIAQSTLEQIFLSFTKYQRQTDD
| Type | Start | End | Length |
| CDS |
81 |
931 |
851 |
| CDS |
999 |
1099 |
101 |
| CDS |
1165 |
1622 |
458 |
| CDS |
1721 |
1861 |
141 |
| CDS |
2166 |
2285 |
120 |
| CDS |
2347 |
2860 |
514 |
| CDS |
2925 |
3311 |
387 |
| CDS |
3383 |
3750 |
368 |
| CDS |
3827 |
4179 |
353 |
| CDS |
4242 |
4422 |
181 |
| intron |
932 |
998 |
67 |
| intron |
1100 |
1164 |
65 |
| intron |
1623 |
1720 |
98 |
| intron |
1862 |
2165 |
304 |
| intron |
2286 |
2346 |
61 |
| intron |
2861 |
2924 |
64 |
| intron |
3312 |
3382 |
71 |
| intron |
3751 |
3826 |
76 |
| intron |
4180 |
4241 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001851801 |
ATP-binding cassette sub-family A member 3 [Culex quinquefasciatus] gb|EDS33777.1| ATP-binding cassette sub-family A member 3 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF12698.2 |
ABC-2 family transporter protein |
3.6e-38 |
| Pfam |
PF13558.1 |
Putative exonuclease SbcCD, C subunit |
0.032 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.074 |
| Pfam |
PF08477.8 |
Miro-like protein |
0.03 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.00016 |
| Pfam |
PF00005.22 |
ABC transporter |
3.8e-35 |
| Pfam |
PF13476.1 |
AAA domain |
6.7e-06 |
| Pfam |
PF00448.17 |
SRP54-type protein, GTPase domain |
0.083 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.04 |
| Pfam |
PF13304.1 |
AAA domain |
9e-23 |
| Pfam |
PF13175.1 |
AAA ATPase domain |
1.8e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.15107 |
| Pn.01290 |
| Pn.00297 |
| Pn.09098 |
| Pn.03292 |
| Pn.15971 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA007221-TA |
| A. mellifera |
GB16275-PA |
| A. aegypti |
AAEL012698 |
| N. vitripennis |
NV12992-PA |
| A. gambiae |
AGAP010582 |
| H. sapiens |
ENSP00000363868 |
| A. gambiae |
AGAP012156 |
| M. musculus |
ENSMUSG00000026944 |
| C. quinquefasciatus |
CPIJ010068 |
| D. melanogaster |
FBgn0036747 |
| C. quinquefasciatus |
CPIJ005854 |
| A. gambiae |
AGAP007504 |
| P. humanus |
PHUM308700-PA |
| B. mori |
BGIBMGA009503-TA |
| D. plexippus |
DPOGS200261PA |
| A. mellifera |
GB12083-PA |
| B. mori |
BGIBMGA007217-TA |
| M. musculus |
ENSMUSG00000020620 |
| P. humanus |
PHUM214970-PA |
| T. castaneum |
TC002280 |
| H. sapiens |
ENSP00000396789 |
| M. musculus |
ENSMUSG00000024130 |
| H. sapiens |
ENSP00000265662 |
| C. quinquefasciatus |
CPIJ010067 |
| T. castaneum |
TC016281 |
| H. melpomene |
HMEL002067-PA |
| H. sapiens |
ENSP00000360666 |
| H. sapiens |
ENSP00000419850 |
| S. invicta |
SI2.2.0_15515 |
| D. melanogaster |
FBgn0083956 |
| A. aegypti |
AAEL004331 |
| H. sapiens |
ENSP00000269080 |
| H. sapiens |
ENSP00000418662 |
| M. musculus |
ENSMUSG00000035435 |
| P. vanderplanki |
Pv.17217 |
| T. castaneum |
TC010527 |
| M. musculus |
ENSMUSG00000054746 |
| P. vanderplanki |
Pv.08341 |
| H. sapiens |
ENSP00000359245 |
| H. sapiens |
ENSP00000432031 |
| H. sapiens |
ENSP00000263094 |
| A. aegypti |
AAEL008388 |
| D. plexippus |
DPOGS213319PA |
| T. castaneum |
TC002276 |
| H. sapiens |
ENSP00000467448 |
| H. sapiens |
ENSP00000465322 |
| H. sapiens |
ENSP00000420527 |
| A. aegypti |
AAEL012700 |
| N. vitripennis |
NV12991-PA |
| H. sapiens |
ENSP00000467271 |
| H. sapiens |
ENSP00000442634 |
| A. aegypti |
AAEL001938 |
| C. quinquefasciatus |
CPIJ010069 |
| M. musculus |
ENSMUSG00000035722 |
| H. sapiens |
ENSP00000409268 |
| B. mori |
BGIBMGA007218-TA |
| H. sapiens |
ENSP00000437682 |
| H. melpomene |
HMEL005383-PA |
| C. quinquefasciatus |
CPIJ005051 |
| H. sapiens |
ENSP00000284425 |
| M. musculus |
ENSMUSG00000004668 |
| H. melpomene |
HMEL005382-PA |
| C. quinquefasciatus |
CPIJ004979 |
| M. musculus |
ENSMUSG00000028125 |
| H. sapiens |
ENSP00000376444 |
| M. musculus |
ENSMUSG00000018800 |
| M. musculus |
ENSMUSG00000041797 |
| H. melpomene |
HMEL011781-PA |
| H. sapiens |
ENSP00000391042 |
| D. plexippus |
DPOGS202910PA |
| H. sapiens |
ENSP00000430341 |
| H. sapiens |
ENSP00000411096 |
| C. quinquefasciatus |
CPIJ009791 |
| T. castaneum |
TC015859 |
| H. sapiens |
ENSP00000342216 |
| H. sapiens |
ENSP00000439707 |
| B. mori |
BGIBMGA009501-TA |
| H. melpomene |
HMEL010559-PA |
| H. sapiens |
ENSP00000376443 |
| H. sapiens |
ENSP00000301732 |
| T. castaneum |
TC016282 |
| T. castaneum |
TC002278 |
| H. sapiens |
ENSP00000394264 |
| M. musculus |
ENSMUSG00000062017 |
| H. sapiens |
ENSP00000374312 |
| C. quinquefasciatus |
CPIJ004980 |
| D. melanogaster |
FBgn0031170 |
| P. vanderplanki |
Pv.12644 |
| H. sapiens |
ENSP00000414062 |
| H. sapiens |
ENSP00000420084 |
| H. sapiens |
ENSP00000467882 |
| B. mori |
BGIBMGA004187-TA |
| T. castaneum |
TC002277 |
| A. mellifera |
GB17394-PA |
| H. melpomene |
HMEL013268-PA |
| H. sapiens |
ENSP00000443203 |
| N. vitripennis |
NV11824-PA |
| A. aegypti |
AAEL008384 |
| H. sapiens |
ENSP00000467251 |
| A. aegypti |
AAEL008386 |
| A. gambiae |
AGAP012155 |
| T. castaneum |
TC013409 |
| T. castaneum |
TC002274 |
| H. sapiens |
ENSP00000344155 |
| D. melanogaster |
FBgn0261998 |
| A. gambiae |
AGAP006380 |
| D. melanogaster |
FBgn0051213 |
| H. sapiens |
ENSP00000429853 |
| A. aegypti |
AAEL012701 |
| P. vanderplanki |
Pv.02290 |
| M. musculus |
ENSMUSG00000041828 |
| H. sapiens |
ENSP00000402814 |
| A. aegypti |
AAEL015146 |
| D. melanogaster |
FBgn0034493 |
| C. quinquefasciatus |
CPIJ004978 |
| A. gambiae |
AGAP011518 |
| H. sapiens |
ENSP00000269081 |
| P. vanderplanki |
Pv.10201 |
| N. vitripennis |
NV12990-PA |
| B. mori |
BGIBMGA012789-TA |
| M. musculus |
ENSMUSG00000044749 |
| H. sapiens |
ENSP00000428032 |
| H. sapiens |
ENSP00000387674 |
| H. sapiens |
ENSP00000465601 |
| H. sapiens |
ENSP00000465351 |
| H. sapiens |
ENSP00000467186 |
| M. musculus |
ENSMUSG00000050296 |
| S. invicta |
SI2.2.0_03311 |
| H. sapiens |
ENSP00000272895 |
| D. plexippus |
DPOGS207110PA |
| N. vitripennis |
NV12988-PA |
| A. aegypti |
AAEL012702 |
| H. sapiens |
ENSP00000407772 |
| P. vanderplanki |
Pv.10234 |
| M. musculus |
ENSMUSG00000015243 |
| A. gambiae |
AGAP010416 |
| D. plexippus |
DPOGS200379PA |
| H. sapiens |
ENSP00000359767 |
| B. mori |
BGIBMGA007308-TA |
| H. sapiens |
ENSP00000371818 |
| P. vanderplanki |
Pv.10202 |
| A. aegypti |
AAEL004968 |
| D. plexippus |
DPOGS200378PA |
| P. vanderplanki |
Pv.11887 |
| A. gambiae |
AGAP006379 |