MidgeBase gene description page [Pn.06127]
Outline
| Gene ID | Pn.06127 |
| Type | Protein coding gene |
| Scaffold | PnScaf5417 |
| Start | 5413 |
| End | 8962 |
| Direction | + |
Sequence
Transcript: 2268 (bp)
ATGGACGAGAACGAATTCCAAATGAATTCGTCGTCATCGCAAGAGTTTAATAATGATGACGGTGGATTTTCGGATTATGCTTCAGCAGACTTGCACACTATCGATTGGCTTAAAGATTTAGCTCGGGATCGCATGCGACATCGGTACATTGTGAAAAGAAGGCAAAACTCACTGTGGGAACTCATAAAGGGCGCTCACGACGCGTTATCGGGATGGCTGTGCGTATTGTTAGTAGGCTTAGTTACGGGATGTGTGGCCGGCGTTATCGACATCGGCGCCTCGTGGATGACCGACCTGAAGTTCGGTTTGTGTCCGCAAGCGTTCTGGTTGAACAGGGAGCAGTGCTGTTGGTCGTCCAACGAGACGACGTTCGACGCGGGAAACTGCTCGCAGTGGCTGACGTGGTCGGAGATTCTAGTTAGTGCCAAAGAGGGCTTCGGCGCGTACATTGTGATGTACTTTTTCTACATTTTCTGGGCGCTCTTCTTCTCGACACTCGCAGCTCTCCTCGTCAAGAACTTCGCGCCGTACGCGTGCGGCTCAGGTATTCCCGAAATCAAGACGATCCTCTCCGGGTTCATCATCCGCGGGTATCTCGGCAAGTGGACGCTCATCATCAAGTCCGTCGGCATCATGCTGTCCGTCAGCGCCGGTCTGAGTCTGGGAAAGGAGGGGCCAATGGTGCACATTGCCAGCTGCGTGGGCAATATCCTTTCATATCTCTTCCCCAAGTACGGCCGAAACGAAGCGAAAAAGCGTGAAATTTTGTCGGCAGCTGCGGCAGCGGGTGTGAGTGTGGCTTTCGGAGCACCCATCGGAGGCGTACTGTTTAGTTTGGAGGAGGTCTCGTATTACTTCCCACTCAAGACCCTGTGGCGCTCGTTCTTCTGTGCCCTCATCGCTGCATTCGTCCTTCGTTCAATCAATCCATTCGGAAATGAGCACTCGGTGCTCTTCTTCGTCGAATATTCCAAGCCGTGGATCTTCGTGGAGCTCATTCCCTTTATTTTCCTGGGAATTATGGGCGGCTGCATCGGAACGCTTTTCATCAAAGCCAACATCTACTGGTGCAAGTTCCGCAAGTGCAGCAAACTCGGCAAATATCCCGTCACCGAGGTTCTCGTCGTTACTCTCATCACGGCCGTTATTGCATTCCCGAACCCGTACACGCGAATGAACACCAGCGAGCTCATTTACTTGTTGTTTAGTCAGTGCGGAATTTCGAGCGGCGATCCGATATGCGACTACAAGAGAAACTTCACCAATGTGAACCAAGCAATTGAGATAGCAGAGATCGGGCCAGGCGTATACAAGGCCATCTGGCTTCTCATTCTCGCGATGATAGTCAAACTCATCATGACCATTTTCACTTTCGGCATCAAAGTTCCGTGCGGCCTGTTCATTCCATCGCTCTGTCTCGGCGCCATCATGGGACGCATCGTAGGTATTTGCATGGAGCAACTGGCCTACAACTACTCGAAAAACTGGATCTTCTCCGGTGAGTGCACGCAAGGCGACGACTGCATTCAGCCGGGTTTGTACGCAATGGTGGGAGCGGCGGCCGTGCTAGGCGGAGTCACCCGCATGACGGTCTCGCTAGTCGTCATCATGTTCGAGTTGACGGGTGGTGTTCGCTACATTGTCCCGCTGATGGCGGCGGCCATGGCGAGTAAGTGGGTCGGCGATGCTCTCGGACGACAGGGCATATACGACGCTCACATCGCTCTCAACGGATATCCCTTTTTGGACAGCAAGGACGAGTTTCAGCATACGACTCTGGCTGGCGATGTCATGCAGCCGAAGCGCAACGAGGGCCTCGCAGTCATTACACAAGACTCGATGACAATAGACGACATCGAAGTGCTTCTGAAAGATACCGAGCACAATGGCTACCCGGTTGTCGTGTCACGTGAAAATCAATATCTCGTTGGATTCATCCTACGAAAAGATTTAAATTTGGCGCTCGCCAACGCGAAGCGAAATTTCGACGGCATTTCGGGACAGTCGCTCGTCATCTTCACCAACAGCTCCGTCGTTCAGAATCTCGGCCCGGCACCTCTCAAACTGAAGAAAATATTAGACTTGGCACCGATAACAGTTACCGATCAAACGCCGATGGAGACTGTCATCGATATGTTTAGGAAGTTGGGATTACGACAAACTTTAGTCACTCATAACGGCCGTCTTCTGGGCGTTATAACGAAAAAGGACGTCCTGAGGCATGTGAAGCAAATGGATAACGAAGATCCTAGCACGATATTATTTAAT
Protein: 756 (aa)
MDENEFQMNSSSSQEFNNDDGGFSDYASADLHTIDWLKDLARDRMRHRYIVKRRQNSLWELIKGAHDALSGWLCVLLVGLVTGCVAGVIDIGASWMTDLKFGLCPQAFWLNREQCCWSSNETTFDAGNCSQWLTWSEILVSAKEGFGAYIVMYFFYIFWALFFSTLAALLVKNFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKSVGIMLSVSAGLSLGKEGPMVHIASCVGNILSYLFPKYGRNEAKKREILSAAAAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSINPFGNEHSVLFFVEYSKPWIFVELIPFIFLGIMGGCIGTLFIKANIYWCKFRKCSKLGKYPVTEVLVVTLITAVIAFPNPYTRMNTSELIYLLFSQCGISSGDPICDYKRNFTNVNQAIEIAEIGPGVYKAIWLLILAMIVKLIMTIFTFGIKVPCGLFIPSLCLGAIMGRIVGICMEQLAYNYSKNWIFSGECTQGDDCIQPGLYAMVGAAAVLGGVTRMTVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDALGRQGIYDAHIALNGYPFLDSKDEFQHTTLAGDVMQPKRNEGLAVITQDSMTIDDIEVLLKDTEHNGYPVVVSRENQYLVGFILRKDLNLALANAKRNFDGISGQSLVIFTNSSVVQNLGPAPLKLKKILDLAPITVTDQTPMETVIDMFRKLGLRQTLVTHNGRLLGVITKKDVLRHVKQMDNEDPSTILFN
| Type | Start | End | Length |
| CDS |
5413 |
5505 |
93 |
| CDS |
5670 |
5683 |
14 |
| CDS |
5806 |
5887 |
82 |
| CDS |
6058 |
7109 |
1052 |
| CDS |
7504 |
7963 |
460 |
| CDS |
8021 |
8121 |
101 |
| CDS |
8242 |
8405 |
164 |
| CDS |
8472 |
8578 |
107 |
| CDS |
8684 |
8790 |
107 |
| CDS |
8872 |
8959 |
88 |
| intron |
5506 |
5669 |
164 |
| intron |
5684 |
5805 |
122 |
| intron |
5888 |
6057 |
170 |
| intron |
7110 |
7503 |
394 |
| intron |
7964 |
8020 |
57 |
| intron |
8122 |
8241 |
120 |
| intron |
8406 |
8471 |
66 |
| intron |
8579 |
8683 |
105 |
| intron |
8791 |
8871 |
81 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688728 |
AGAP005777-PA [Anopheles gambiae str. PEST] ref|XP_315792.4| AGAP005777-PB [Anopheles gambiae str. PEST] gb|EDO63734.1| AGAP005777-PA [Anopheles gambiae str. PEST] gb|EAA11899.4| AGAP005777-PB [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR014743 |
Chloride channel, core |
|
| InterPro |
IPR001807 |
Chloride channel, voltage gated |
|
| InterPro |
IPR000644 |
Cystathionine beta-synthase, core |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006821 |
chloride transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005247 |
voltage-gated chloride channel activity |
|
| Pfam |
PF00654.15 |
Voltage gated chloride channel |
7.9e-100 |
| Pfam |
PF00571.23 |
CBS domain |
8.9e-14 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000365276 |
| M. musculus |
ENSMUSG00000004319 |
| H. sapiens |
ENSP00000424540 |
| B. mori |
BGIBMGA003862-TA |
| H. sapiens |
ENSP00000304257 |
| N. vitripennis |
NV16826-PA |
| H. sapiens |
ENSP00000365259 |
| H. sapiens |
ENSP00000370213 |
| C. quinquefasciatus |
CPIJ004937 |
| T. castaneum |
TC003158 |
| H. melpomene |
HMEL013532-PA |
| A. gambiae |
AGAP005777 |
| H. sapiens |
ENSP00000425323 |
| S. invicta |
SI2.2.0_04521 |
| P. humanus |
PHUM563800-PA |
| A. mellifera |
GB14095-PA |
| H. sapiens |
ENSP00000261514 |
| H. sapiens |
ENSP00000405754 |
| H. sapiens |
ENSP00000370209 |
| H. sapiens |
ENSP00000424603 |
| P. vanderplanki |
Pv.10619 |
| H. sapiens |
ENSP00000365256 |
| S. invicta |
SI2.2.0_00405 |
| A. aegypti |
AAEL001752 |
| H. sapiens |
ENSP00000353857 |
| M. musculus |
ENSMUSG00000000605 |
| D. melanogaster |
FBgn0036566 |
| D. plexippus |
DPOGS203340PA |