MidgeBase gene description page [Pn.06086]
Outline
| Gene ID | Pn.06086 |
| Type | Protein coding gene |
| Scaffold | PnScaf5371 |
| Start | 29664 |
| End | 31037 |
| Direction | - |
Sequence
Transcript: 1371 (bp)
ATGTGGTGGAAAATATTGTTTGGCGCAATTTTAGTCTCGAAAATTCAATCGAGGATTCCAGGTATCGGCAATGATGACAGCGCCATTAACACGATTGTAACCACCGCCACAAATGGAATCCTCGCCGTCTGCGAGCACCGACATTTGACCATCAACATCATTGTGCCGTCGAATTTCTCGCAAAATATCCGGCTTCGTCATGCTCTGCACGGCATAGTTCAGCAAATCGCGAAGAGTGTGAGCTGCAGCTATCAAATAAAAACAGCGAATGCCTTGAAGGGCACTCGAATGAGATTCGGTGTTTTCCTAATTGACGCCGGCGACTACGACGAAATTTCGCAATCAATCACTTCGAGTTTGTTCAATTTTCGAAAGTATTTCGTCGTGGTTTTGATGAGTGGATCGCGACGAGACATCGAAGATATTTTAAGCGACATGTGGACGAATAAGTTCATCTTCAATGTAAACATTGTGCACTGCTGCCACGACATGAAGGCTCAGGTGACGACATTCATGCCATTTCACGATGAAAGATGCTCAGACACGACTCCCGTGGAATTATTTGAAACCGACATTTTTTTCCCCGAAAAACTGAACAACTTGCACAAATGTTCGATAATCGTGGCGACTGCTCTCGACGCCGAGCCTTGCGTTTACGCCAAGAAGGACGCCAACGGAAGCATCATTCCAGCTGGCAGCGATATTGATGTCATCGAGACACTCGCGCAAGTGCTGAACTTTCAGGCTGAGTACGAGTTCACGAAGACGCAAGGATTCGTTGAAGTCGACGGATCGGCCGAAGGGCCTTTCAAACTGCTTCTCGAGAAAAAGGCTCACCTCGCCTGCGACTGCTATTGGCTCACGAATACAAGAGCGAATTTCATGGATCACACTTCGGCGTATTACAACGACTATGTTATTCTTGTCGTTCCGCCTGGAAAAAATCTAACTCCCTTCGAGAAGCTCCTGTATCCGTTTGACTGGACCGTTTGGACGCTTCTTTGGTCGTGCATGTTTTTCGGGCTGGTGATAATCACCGCAATAAAAACCTATTCAAATTCAAAGGTTCGTGCAGCTGTTTTCGGTGAGAGAAACGCGAGCCCGGCCATGAATTTTCTGTCTGTTTTACTCGTTGGAAATCAACACATTTGGCCGCGAAAATTGTTTGCTCGTTTACTTTTATTGAACTTTCTGTTCTTCACACTGAACATGAGGACTCTCTATCAAGGCGCAATGTTCGAGCTGATGCACACAAATCGAAAGCATGACGAGATGAAGTCGATTGACGAGATTCGAGACAGTGGTTTTCCTATCTACGTTCTCAAAACTTCATACGAATTGTTCGCTAACAATCCAAACATCAAGAAAAGG
Protein: 457 (aa)
MWWKILFGAILVSKIQSRIPGIGNDDSAINTIVTTATNGILAVCEHRHLTINIIVPSNFSQNIRLRHALHGIVQQIAKSVSCSYQIKTANALKGTRMRFGVFLIDAGDYDEISQSITSSLFNFRKYFVVVLMSGSRRDIEDILSDMWTNKFIFNVNIVHCCHDMKAQVTTFMPFHDERCSDTTPVELFETDIFFPEKLNNLHKCSIIVATALDAEPCVYAKKDANGSIIPAGSDIDVIETLAQVLNFQAEYEFTKTQGFVEVDGSAEGPFKLLLEKKAHLACDCYWLTNTRANFMDHTSAYYNDYVILVVPPGKNLTPFEKLLYPFDWTVWTLLWSCMFFGLVIITAIKTYSNSKVRAAVFGERNASPAMNFLSVLLVGNQHIWPRKLFARLLLLNFLFFTLNMRTLYQGAMFELMHTNRKHDEMKSIDEIRDSGFPIYVLKTSYELFANNPNIKKR
| Type | Start | End | Length |
| CDS |
29667 |
31037 |
1371 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865804 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS42301.1| conserved hypothetical protein [Culex quinquefasciatus] |
3e-33 |
| InterPro |
IPR001638 |
Extracellular solute-binding protein, family 3 |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(CC) |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
0.00023 |
| Pfam |
PF00497.15 |
Bacterial extracellular solute-binding proteins, family 3 |
4.9e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM060500-PA |
| H. melpomene |
HMEL016670-PA |
| A. gambiae |
AGAP003880 |
| C. quinquefasciatus |
CPIJ005371 |
| N. vitripennis |
NV14263-PA |
| D. melanogaster |
FBgn0031100 |
| B. mori |
BGIBMGA000966-TA |
| S. invicta |
SI2.2.0_01020 |
| A. aegypti |
AAEL010721 |
| T. castaneum |
TC007802 |
| A. mellifera |
GB17851-PA |
| D. plexippus |
DPOGS213275PA |
| P. vanderplanki |
Pv.00616 |
| A. gambiae |
AGAP013454 |