MidgeBase gene description page [Pn.06057]
Outline
| Gene ID | Pn.06057 |
| Type | Protein coding gene |
| Scaffold | PnScaf5349 |
| Start | 63 |
| End | 680 |
| Direction | - |
Sequence
Transcript: 471 (bp)
ATGATCCTGCCGAACATTGGCGGCTGGATCTCGGGTCCACTTTTCAGAGATAGCATAGTTAATTGGTCGAAGACACTCGTTAAACCTGAACTAAATCCGCCGAGTTGGGTGTTTTGGCCGGTGTGGACTTTCCTCTATCTGTCAATGGGTTACGCAAGCTATCTTGTGTGGAGAGATGGCGGTGGCTTCAGTGGACCTGCTCGAGTGCCGCTAATTTTGTACGGAATTCAGCTCGGCTTGAACTGGATCTGGCCACCGATTTACTTCGGATTACATTCGTTAAAATGGAGCTCTATCGAGATTGTGGTGCTGACGCTAGCGGTAGTAGCTACTGCCATTTCTTTCTTCCGCATCAATAGACTCGCCGGATTCCTCTTCATCCCATACATCGCTTGGTTAAGCTTCGCATCGTTCCTCAACTACTCGATCTATCGCCTAAACACGCCAGCCAACGAGGATAAAAAAGACCTT
Protein: 157 (aa)
MILPNIGGWISGPLFRDSIVNWSKTLVKPELNPPSWVFWPVWTFLYLSMGYASYLVWRDGGGFSGPARVPLILYGIQLGLNWIWPPIYFGLHSLKWSSIEIVVLTLAVVATAISFFRINRLAGFLFIPYIAWLSFASFLNYSIYRLNTPANEDKKDL
| Type | Start | End | Length |
| CDS |
66 |
248 |
183 |
| CDS |
393 |
680 |
288 |
| intron |
249 |
392 |
144 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR28582 |
hypothetical protein AND_03309 [Anopheles darlingi] |
9e-50 |
| InterPro |
IPR004307 |
TspO/MBR-related protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF11298.3 |
Protein of unknown function (DUF3099) |
0.14 |
| Pfam |
PF03073.10 |
TspO/MBR family |
2.6e-48 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02272 |
| Pn.06058 |
| Pn.06059 |
| Pn.08663 |
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS201707PA |
| C. quinquefasciatus |
CPIJ009682 |
| A. mellifera |
GB11103-PA |
| A. aegypti |
AAEL004067 |
| H. melpomene |
HMEL016884-PA |
| P. vanderplanki |
Pv.04392 |
| C. quinquefasciatus |
CPIJ009683 |
| P. vanderplanki |
Pv.14006 |
| A. gambiae |
AGAP000426 |
| M. musculus |
ENSMUSG00000041736 |
| H. sapiens |
ENSP00000338004 |
| N. vitripennis |
NV11802-PA |
| H. sapiens |
ENSP00000328973 |
| D. melanogaster |
FBgn0031263 |