MidgeBase gene description page [Pn.06039]
Outline
| Gene ID | Pn.06039 |
| Type | Protein coding gene |
| Scaffold | PnScaf5339 |
| Start | 66490 |
| End | 68749 |
| Direction | - |
Sequence
Transcript: 2181 (bp)
ATGGAGAAGCCACAGAAAATGCCGAAAGTTGCAAAAGTAAAGAACAAAGCACCGGCTGAGATTCAAATCACGGCCGAGCAACTGCTGCGAGAGGCAAAAGAACGTGATTTGGAAATTCTTCCGCCGCCACCAAAACAAAAAATCTCCGATGAAGCCGAGCTTGCTGACTACCAACAGAGAAAGAGAAAAACCTTCGAGGATAATCTCAGGAAGAACCGTAGCGTCGTCAGCAATTGGATAAAATACGCTCAATGGGAGGAATCACAGAAGGAAATCAAGCGAGCACGATCGATTTGGGAACGTGCGCTGGACAATGACCACAGAAACATCACGATATGGCTGAAGTACGCCGAAATGGAAATGAAGAACAAGCAGATCAACCATGCGAGGAATTTATGGGACAGAGCCATCACGATTATGCCGAGAGTGAATCAATTCTGGTACAAATACACCTACATGGAAGAAATGCTCGAGAATGTGGCAGGTGCGCGGCAGGTTTTCGAGCGCTGGATGGACTGGCAACCAGAGGAACAAGCATGGCAGACGTACATTAATTTTGAGCTCCGTTACAAAGAGCTCGATAGAGCACGAAAAGTCTACGAGCGCTTCGTGATGGTTCATCCGGAGGTCAAAAACTGGATAAAGTATGCGCGATTTGAGGAAACCCACGGATTCATAAACAGTGCGAGGACCGTCTTCGAGCGAGCCGTTGAGTTCTTCGGCGACGATCACATGGACGAGAAATTGTACATTGCATTCGCTAAGTTTGAGGAGAACCAGCGTGAGCACGAACGAGCACGCGTAATTTACAAGTATGCGCTCGCTCAGATGCCGAAAGAGAAGGCGCTCGACCTCTACAAAGCGTACAGTATTCACGAGAAAAAGTTCGGAGACAAGGCAGGAATCGAGGACGTTATAACGTCAAAGAGAAAATTTCAATACGAGCAGGAAATTGCTGAAAATCCCACCAATTATGACTCTTGGTTCGACTACATTCGCATAATCGAGAACGAAGGCGACGTGGAGGTGACACGGGAAACATATGAGCGAGCAATTGCTAACGTTCCGCCAGCCAACGACAAAAACTTTTGGCGCCGCTACATTTATTTGTGGATTAACTATGCGCTCTTTGAAGAGCTCGAAACGGAGGATGTGGAGCGTACACGACAAATTTACAAGACATGCCTCGAGCTCATACCTCATAAAATCTTTACATTCAGTAAAATGTGGCTCTACTACGCGCAGTTCGAAATCCGCCAGAAGAATCTTCAGGTTGCGAGAAAAACGCTCGGAATGGCAATCGGAATGTGTCCGCGTGATAAAATCTACCGCGGCTACATCGAGCTTGAAATTCAGTTGCGTGAGTTTGATCGCTGTCGCATTTTGTACGAGAAATTCCTTGAATTTAATCCAGAAAACTGCATCACGTGGATGAAGTTTGCTGAACTCGAAACACTCCTCGGCGACATCGACAGAGCTCGGGCCATTTACGAACTGGCCATAAATCAACCGCGACTAGACATGCCAGAGCTGTTGTGGAAGAGTTTCATCGACTTTGAGGTCTCACAAGGCGAAATTGAGCTGGCAAGACAACTCTACGAGCGACTTCTCGAAAGAACGGGCCACGTGAAAGTTTGGATTTCGTTCGCCAAATTCGAACTGACTTCGGAGACTACAGAAGACGGCATGAACGTATCGCTTGCTCGCAGAGTGTTTGAGAAGGCAAACGATTGTCAAAAGAATCTTAACGACCGAGAATCACGAGTTCTCTTGCTTGAGGCATGGAGAGACTTTGAGAAAGAGCACGGCGATGATGAGTCTCTGGAGAAAGTTCTCACGAAGATGCCGCGGAGAGTCAAAAAGAGGCAAAAGATTGTATCCGAGTCTGGCGAGACCGAAGGCTGGGAGGAGGTGTTTGACTACATATTTCCCGAGGACGAGATGGCCAAGCCCAATCTCAAGCTTCTTGCTGCCGCTAAGAACTGGAAGAAGGCAATGGTGCAACCGGCTGCACAGAATCCACAGAATCAAGATGACGACGACAGTCAAAGCGGAGCAGACGACAACGATCAAAGTGACAGCAGCGAAGAAGACGCAGACGGTGAGGAGAAGGAGGCAGAGGAAAGAGCGGAAGAGCAGCCGACAGAAAGTAACACTGGCGATGAGAAAGGAGATGGAAAC
Protein: 727 (aa)
MEKPQKMPKVAKVKNKAPAEIQITAEQLLREAKERDLEILPPPPKQKISDEAELADYQQRKRKTFEDNLRKNRSVVSNWIKYAQWEESQKEIKRARSIWERALDNDHRNITIWLKYAEMEMKNKQINHARNLWDRAITIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMDWQPEEQAWQTYINFELRYKELDRARKVYERFVMVHPEVKNWIKYARFEETHGFINSARTVFERAVEFFGDDHMDEKLYIAFAKFEENQREHERARVIYKYALAQMPKEKALDLYKAYSIHEKKFGDKAGIEDVITSKRKFQYEQEIAENPTNYDSWFDYIRIIENEGDVEVTRETYERAIANVPPANDKNFWRRYIYLWINYALFEELETEDVERTRQIYKTCLELIPHKIFTFSKMWLYYAQFEIRQKNLQVARKTLGMAIGMCPRDKIYRGYIELEIQLREFDRCRILYEKFLEFNPENCITWMKFAELETLLGDIDRARAIYELAINQPRLDMPELLWKSFIDFEVSQGEIELARQLYERLLERTGHVKVWISFAKFELTSETTEDGMNVSLARRVFEKANDCQKNLNDRESRVLLLEAWRDFEKEHGDDESLEKVLTKMPRRVKKRQKIVSESGETEGWEEVFDYIFPEDEMAKPNLKLLAAAKNWKKAMVQPAAQNPQNQDDDDSQSGADDNDQSDSSEEDADGEEKEAEERAEEQPTESNTGDEKGDGN
| Type | Start | End | Length |
| CDS |
66493 |
68451 |
1959 |
| CDS |
68528 |
68749 |
222 |
| intron |
68452 |
68527 |
76 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653815 |
crooked neck protein [Aedes aegypti] gb|EAT38766.1| crooked neck protein [Aedes aegypti] |
0.0 |
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR003107 |
RNA-processing protein, HAT helix |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
1.8e-06 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
2.4 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
0.77 |
| Pfam |
PF08640.6 |
U3 small nucleolar RNA-associated protein 6 |
0.12 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
4.5e-17 |
| Pfam |
PF05843.9 |
Suppressor of forked protein (Suf) |
4.7e-14 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
1.6e-07 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
4.5e-16 |
| Pfam |
PF08311.7 |
Mad3/BUB1 homology region 1 |
0.00013 |
| Pfam |
PF02184.11 |
HAT (Half-A-TPR) repeat |
1.2e-42 |
| Pfam |
PF07458.7 |
Sperm protein associated with nucleus, mapped to X chromosome |
0.0039 |
| Pfam |
PF04363.7 |
Protein of unknown function (DUF496) |
4.3 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
1.3e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ008391 |
| N. vitripennis |
NV14445-PA |
| S. invicta |
SI2.2.0_02961 |
| D. plexippus |
DPOGS211365PA |
| M. musculus |
ENSMUSG00000001767 |
| A. aegypti |
AAEL009383 |
| D. melanogaster |
FBgn0000377 |
| H. melpomene |
HMEL002788-PA |
| B. mori |
BGIBMGA008459-TA |
| A. mellifera |
GB15949-PA |
| P. humanus |
PHUM169990-PA |
| H. sapiens |
ENSP00000366557 |
| H. sapiens |
ENSP00000440733 |
| P. vanderplanki |
Pv.10670 |
| H. sapiens |
ENSP00000366544 |
| T. castaneum |
TC004395 |
| A. gambiae |
AGAP001879 |
| M. musculus |
ENSMUSG00000092012 |