MidgeBase gene description page [Pn.06037]
Outline
| Gene ID | Pn.06037 |
| Type | Protein coding gene |
| Scaffold | PnScaf5339 |
| Start | 62907 |
| End | 63899 |
| Direction | - |
Sequence
Transcript: 990 (bp)
ATGGCCATTAAGCCTCGAAAGAACTCTTTTATGCGGCCAATCATTCAGGTAAATGACGATGTTTTCCAAAAAGGCCGCATAATTTGCAAAGTACTTTTGTGCAGATTCGTTAAGCAGGACGAGAAGTATGTTGGTGTTTATTCAAACATTCTATGGAGATTTGCAGCGACAAACAAGGAGCTGCAATATGAAATAATCGGAGAACTTGATCAGCAATCGTCCAAGAAGAAGAAATCTCATTATGACAATCTTCTGAAGAAATTTTTCCGCCTCGAATGCGATCTAAAAACAGAGTATGAGAAATGGCAGAAGGCTCACGAGCATTTCAGCAAAAAGAAGGAATCTGATGACGCCCTCGTTACTCAATTGGATCAAGAAGTTGTGGAGAATCTCTTTAGCTTTATTTGCTCACAAAACAACAATATCAAGCGCATTTCCTCCTTAGTCGAAAAATTGTGCCTCAACTTCGGAAGTAAAATTTGCACCTTTGAAGACAGGGACTATTACTCATTTCCCACACTTGAAGCGCTATCGCAGAGTGCAGTTGAAAACAAATTGCGAGAATTAGGATTTGGATACCGGGCGAAATACATTCAAAAGGCTGCCGAAGAAATTCTCGCAAACGGAGGAATCGAGTGGCTTGAGGGCCTCAAATTAATGAAATACGAAGAGGCACACAGTGAACTGGTCAAACTAAGCGGAATAGGTCCAAAAGTAGCTGACTGTATATGCCTAATGTCATTAAACTTCCTCCAAGCCATTCCCGTTGACACTCACGTGCTGAAAATTTCTCAGCACTACTTGCCTGAATTGAAGAATTTCAAGTCAATGAATTTGACACTTTATCGCAAGATAGGAGATACCTTCCGAAACGTTTACGGCGATTGGTCGGGAGTTGCTCAGACAGTCCTATTTTGCAAAGAACTGAATGTCCTCGAAAGCGAGGAGAAAGTATCGAACAAGAAAAAGAAGAAAAAGCAATCGGATTCG
Protein: 330 (aa)
MAIKPRKNSFMRPIIQVNDDVFQKGRIICKVLLCRFVKQDEKYVGVYSNILWRFAATNKELQYEIIGELDQQSSKKKKSHYDNLLKKFFRLECDLKTEYEKWQKAHEHFSKKKESDDALVTQLDQEVVENLFSFICSQNNNIKRISSLVEKLCLNFGSKICTFEDRDYYSFPTLEALSQSAVENKLRELGFGYRAKYIQKAAEEILANGGIEWLEGLKLMKYEEAHSELVKLSGIGPKVADCICLMSLNFLQAIPVDTHVLKISQHYLPELKNFKSMNLTLYRKIGDTFRNVYGDWSGVAQTVLFCKELNVLESEEKVSNKKKKKKQSDS
| Type | Start | End | Length |
| CDS |
62910 |
63899 |
990 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849300 |
N-glycosylase/DNA lyase [Culex quinquefasciatus] gb|EDS30008.1| N-glycosylase/DNA lyase [Culex quinquefasciatus] |
3e-79 |
| InterPro |
IPR011257 |
DNA glycosylase |
|
| InterPro |
IPR012904 |
8-oxoguanine DNA glycosylase, N-terminal |
|
| InterPro |
IPR023170 |
Helix-turn-helix, base-excision DNA repair, C-terminal |
|
| InterPro |
IPR003265 |
HhH-GPD domain |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(BP) |
GO:0006284 |
base-excision repair |
|
| Gene Ontology(BP) |
GO:0006289 |
nucleotide-excision repair |
|
| Gene Ontology(MF) |
GO:0003684 |
damaged DNA binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0008534 |
oxidized purine base lesion DNA N-glycosylase activity |
|
| Pfam |
PF07934.7 |
8-oxoguanine DNA glycosylase, N-terminal domain |
1.6e-10 |
| Pfam |
PF00730.20 |
HhH-GPD superfamily base excision DNA repair protein |
3.7e-26 |
| Pfam |
PF00633.18 |
Helix-hairpin-helix motif |
0.00042 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000305584 |
| H. sapiens |
ENSP00000344899 |
| H. sapiens |
ENSP00000373337 |
| H. sapiens |
ENSP00000342851 |
| D. plexippus |
DPOGS207004PA |
| H. sapiens |
ENSP00000390337 |
| H. sapiens |
ENSP00000303132 |
| H. sapiens |
ENSP00000399810 |
| H. sapiens |
ENSP00000345520 |
| B. mori |
BGIBMGA012924-TA |
| T. castaneum |
TC009047 |
| D. melanogaster |
FBgn0027864 |
| H. sapiens |
ENSP00000306561 |
| P. humanus |
PHUM491230-PA |
| H. sapiens |
ENSP00000305527 |
| A. gambiae |
AGAP001854 |
| P. vanderplanki |
Pv.10668 |
| C. quinquefasciatus |
CPIJ007194 |
| S. invicta |
SI2.2.0_05704 |
| H. sapiens |
ENSP00000403598 |
| A. mellifera |
GB17607-PA |
| A. aegypti |
AAEL013179 |
| A. aegypti |
AAEL008148 |
| H. melpomene |
HMEL008666-PA |
| M. musculus |
ENSMUSG00000030271 |
| H. sapiens |
ENSP00000393726 |