MidgeBase gene description page [Pn.06028]
Outline
| Gene ID | Pn.06028 |
| Type | Protein coding gene |
| Scaffold | PnScaf5339 |
| Start | 42709 |
| End | 44172 |
| Direction | + |
Sequence
Transcript: 1209 (bp)
ATGATGATAGGCAGTAGCAACCGAACATGCATTCGAAGCAGATGGACCGGCCAAAAGCCACATTGCTATGGTCTGAACCAGGAGAACGACTACGCAATGGAAAAGGCGCCGACAATATTGTTCAGGCATCAAAACGGGCCAATTGCGCAGAGCAATGATGGACGCTTGATAGTGTATCCCGGAACCACAGTTCACATGGAATGCCTCTGGATGAGACGATTCGGCACGCCGCGATGGAACGTCAGCCACGAATTCAAAAAATATCCAGAGGGCTGGAACACGGACGAGGGCAGAGATCCGCAGCTGGAATATCGATTGAGTATTTTCAACGCTGAAACGGGAGACACGGGAACGTACACGTGCATTACACCTGCACGCCACACACACTCCGTCTTCGTGGAGGTGAAGGCGGTTCACTGCGGTGAAATCATGCCGAGAAGGGGACTGGTGCTGAGCACGACGGCCACTCAAATGGGCTCGCGAGTTCAGTTTTCCTGCAACAACGGCAACGCGCTGATCGGAGCATCGGAGATTCAGTGCTTGGCGAGTGGGAACTGGAGCGGCTCACTGCCGATTTGCGAGAGCGTCGAGTGTGGAGAGGTGCCGATTCCAGCGAGTCTGAATGGCTCAGCGCCTCGAGTCGCAATCATATCGAGAGAGGTCGGAGGACGCGCAGCCTTTTCCTGTCCACCGGGACACGGTCTCAAGGGACCGAGCGAGACCGTTTGTCTTCCATCTGGCGAGTGGAGCGGACCCATTCCGACGTGCTCAGAAGTTCAGTGCTTCCACCCCGGTCAGCCATCAAACGGATACACACAAGGCACGCCGCCCTACAAGGCCGGCGATGTAGTCCAATTCAATTGCAATCCCGAGTACATGATGCAAGGCCAACCGATAATCGCGTGCCAAGACAATGGAAGGTGGAGCGGACCGATTCCGAAATGCGTGAGGGCTTGCAGCTATCCTGGCACAGCCATTAGCGGACGAATGTCTTCCGTCAAATTTTACTACACCATTGGCGAGACTGTGGCGTTTTCGTGCGATAATGGTCTGGAAATTCGCGGACCGAAAATGCTCAAGTGTTTAAAAGACGGAAAATGGAGCAGTTCGATTCCGGTGTGTGTGTCACCTGAAGCCGAAGCTGCGGCCGCAGCAGGAGCTTCCAACACGCCAAGAGCAACGCGAGCCGCAAAAATTGAACGAGTTTTC
Protein: 403 (aa)
MMIGSSNRTCIRSRWTGQKPHCYGLNQENDYAMEKAPTILFRHQNGPIAQSNDGRLIVYPGTTVHMECLWMRRFGTPRWNVSHEFKKYPEGWNTDEGRDPQLEYRLSIFNAETGDTGTYTCITPARHTHSVFVEVKAVHCGEIMPRRGLVLSTTATQMGSRVQFSCNNGNALIGASEIQCLASGNWSGSLPICESVECGEVPIPASLNGSAPRVAIISREVGGRAAFSCPPGHGLKGPSETVCLPSGEWSGPIPTCSEVQCFHPGQPSNGYTQGTPPYKAGDVVQFNCNPEYMMQGQPIIACQDNGRWSGPIPKCVRACSYPGTAISGRMSSVKFYYTIGETVAFSCDNGLEIRGPKMLKCLKDGKWSSSIPVCVSPEAEAAAAAGASNTPRATRAAKIERVF
| Type | Start | End | Length |
| CDS |
42709 |
42805 |
97 |
| CDS |
42874 |
43033 |
160 |
| CDS |
43099 |
43424 |
326 |
| CDS |
43482 |
43654 |
173 |
| CDS |
43717 |
44169 |
453 |
| intron |
42806 |
42873 |
68 |
| intron |
43034 |
43098 |
65 |
| intron |
43425 |
43481 |
57 |
| intron |
43655 |
43716 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659870 |
c4b-binding protein beta chain [Aedes aegypti] gb|EAT38880.1| c4b-binding protein beta chain [Aedes aegypti] |
0.0 |
| InterPro |
IPR000436 |
Sushi/SCR/CCP |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR016060 |
Complement control module |
|
| Pfam |
PF00084.15 |
Sushi domain (SCR repeat) |
6.7e-40 |
| Pfam |
PF00047.20 |
Immunoglobulin domain |
0.021 |
| Pfam |
PF02793.17 |
Hormone receptor domain |
0.4 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
0.018 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
0.0049 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0032797 |
| A. aegypti |
AAEL009266 |
| C. quinquefasciatus |
CPIJ000462 |
| P. humanus |
PHUM204120-PA |
| H. melpomene |
HMEL014512-PA |
| S. invicta |
SI2.2.0_08169 |
| P. vanderplanki |
Pv.17638 |
| D. plexippus |
DPOGS213342PA |
| A. gambiae |
AGAP007761 |
| A. mellifera |
GB10659-PA |
| P. vanderplanki |
Pv.17640 |
| B. mori |
BGIBMGA009149-TA |
| N. vitripennis |
NV15012-PA |
| T. castaneum |
TC009361 |