MidgeBase gene description page [Pn.05999]
Outline
| Gene ID | Pn.05999 |
| Type | Protein coding gene |
| Scaffold | PnScaf5321 |
| Start | 2372 |
| End | 3551 |
| Direction | + |
Sequence
Transcript: 546 (bp)
ATGGGAAACGTATTTGCGAATCTATTCAAGGGTTTATTTGGTAAAAAGGAGATGAGAATATTGATGGTCGGTTTGGATGCGGCGGGTAAAACGACAATTTTATACAAGCTTAAATTAGGTGAAATTGTAACTACAATCCCAACCATTGGCTTCAACGTTGAAACTGTAGAATACAAAAATATTTCATTCACTGTTTGGGACGTCGGTGGTCAAGACAAAATCCGCCCACTCTGGAGACATTACTTCCAAAATACGCAAGGACTTATCTTTGTCGTTGATAGTAATGATCGTGAGCGTGTTGGCGAAGCTCGTGAAGAACTAATGAGAATGCTAGCTGAAGATGAGTTGAGGGATGCTGTACTTTTAATTTTCGCCAATAAGCAGGATTTGCCCAATGCTATGAATGCAGCCGAAATTACAGATAAATTAGGTCTTCACTCATTACGAAACCGAAGCTGGTATATTCAAGCAACGTGTGCAACAAGCGGTGATGGCCTCTATGAAGGTTTGGATTGGCTTTCAAATCAACTGAAGAACGCTAATCGT
Protein: 182 (aa)
MGNVFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNANR
| Type | Start | End | Length |
| CDS |
2372 |
2434 |
63 |
| CDS |
2524 |
2578 |
55 |
| CDS |
2784 |
2864 |
81 |
| CDS |
2927 |
2985 |
59 |
| CDS |
3095 |
3220 |
126 |
| CDS |
3298 |
3359 |
62 |
| CDS |
3449 |
3548 |
100 |
| intron |
2435 |
2523 |
89 |
| intron |
2579 |
2783 |
205 |
| intron |
2865 |
2926 |
62 |
| intron |
2986 |
3094 |
109 |
| intron |
3221 |
3297 |
77 |
| intron |
3360 |
3448 |
89 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_476955 |
ADP ribosylation factor 79F, isoform B [Drosophila melanogaster] ref|NP_730757.1| ADP ribosylation factor 79F, isoform A [Drosophila melanogaster] ref|NP_730758.1| ADP ribosylation factor 79F, isoform C [Drosophila melanogaster] ref|NP_730759.1| ADP ribosylation factor 79F, isoform H [Drosophila melanogaster] ref|NP_730760.1| ADP ribosylation factor 79F, isoform E [Drosophila melanogaster] ref|NP_001097667.1| ADP ribosylation factor 79F, isoform F [Drosophila melanogaster] ref|NP_001097668.2| ADP ribosylation factor 79F, isoform I [Drosophila melanogaster] ref|XP_320516.2| AGAP012014-PA [Anopheles gambiae str. PEST] ref|XP_001353378.1| GA21036 [Drosophila pseudoobscura pseudoobscura] ref|XP_001652515.1| adp-ribosylation factor, arf [Aedes aegypti] ref|XP_001845819.1| ADP-ribosylation factor 1 [Culex quinquefasciatus] ref|XP_001958592.1| GF23441 [Drosophila ananassae] ref|XP_001973775.1| GG13164 [Drosophila erecta] ref|XP_001984951.1| GH14762 [Drosophila grimshawi] ref|XP_002008343.1| GI11864 [Drosophila mojavensis] ref|XP_002021149.1| GL25178 [Drosophila persimilis] ref|XP_002040963.1| GM22073 [Drosophila sechellia] ref|XP_002047666.1| GJ13559 [Drosophila virilis] ref|XP_002068485.1| GK20496 [Drosophila willistoni] ref|XP_002095857.1| GE19486 [Drosophila yakuba] ref|XP_002085948.1| GD12049 [Drosophila simulans] sp|P61209.2|ARF1_DROME RecName: Full=ADP-ribosylation factor 1 sp|P61210.2|ARF1_LOCMI RecName: Full=ADP-ribosylation factor 1; AltName: Full=lARF1 gb|AAF21238.1|U90609_1 ADP-ribosylation factor 1 [Locusta migratoria] gb|AAB27066.1| ADP-ribosylation factor 1 [Drosophila melanogaster] gb|AAF51871.1| ADP ribosylation factor 79F, isoform A [Drosophila melanogaster] gb|AAF51872.1| ADP ribosylation factor 79F, isoform E [Drosophila melanogaster] gb|AAF51873.1| ADP ribosylation factor 79F, isoform C [Drosophila melanogaster] gb|AAF51874.1| ADP ribosylation factor 79F, isoform B [Drosophila melanogaster] gb|AAL25414.1| LD24904p [Drosophila melanogaster] gb|AAN12207.1| ADP ribosylation factor 79F, isoform H [Drosophila melanogaster] gb|EAL30885.1| GA21036 [Drosophila pseudoobscura pseudoobscura] gb|EAA00461.2| AGAP012014-PA [Anopheles gambiae str. PEST] gb|ABF18254.1| GTP-binding ADP-ribosylation factor Arf1 [Aedes aegypti] gb|EAT41274.1| adp-ribosylation factor, arf [Aedes aegypti] gb|ABW08583.1| ADP ribosylation factor 79F, isoform F [Drosophila melanogaster] gb|EDS41801.1| ADP-ribosylation factor 1 [Culex quinquefasciatus] gb|EDV41398.1| GF23441 [Drosophila ananassae] gb|EDV52801.1| GG13164 [Drosophila erecta] gb|EDV97299.1| GH14762 [Drosophila grimshawi] gb|EDW18819.1| GI11864 [Drosophila mojavensis] gb|EDW40305.1| GL25178 [Drosophila persimilis] gb|EDW44516.1| GM22073 [Drosophila sechellia] gb|EDW70008.1| GJ13559 [Drosophila virilis] gb|EDW79471.1| GK20496 [Drosophila willistoni] gb|EDW95569.1| GE19486 [Drosophila yakuba] gb|EDX11533.1| GD12049 [Drosophila simulans] gb|ABW08584.2| ADP ribosylation factor 79F, isoform I [Drosophila melanogaster] gb|ACL84512.1| Arf79F-PA [synthetic construct] gb|ACL89450.1| Arf79F-PA [synthetic construct] gb|ADD18719.1| ADP ribosylation factor 79F [Glossina morsitans morsitans] |
1e-102 |
| InterPro |
IPR024156 |
Small GTPase superfamily, ARF type |
|
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR003579 |
Small GTPase superfamily, Rab type |
|
| InterPro |
IPR006687 |
Small GTPase superfamily, SAR1-type |
|
| InterPro |
IPR006689 |
Small GTPase superfamily, ARF/SAR type |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(BP) |
GO:0007264 |
small GTPase mediated signal transduction |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
4.5e-79 |
| Pfam |
PF13671.1 |
AAA domain |
0.097 |
| Pfam |
PF01591.13 |
6-phosphofructo-2-kinase |
0.0063 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
7.7e-15 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
1.6e-05 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
5.6e-11 |
| Pfam |
PF00503.15 |
G-protein alpha subunit |
1.3e-10 |
| Pfam |
PF08477.8 |
Miro-like protein |
4.8e-08 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.0055 |
| Pfam |
PF00071.17 |
Ras family |
1.2e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000048076 |
| H. melpomene |
HMEL012957-PA |
| T. castaneum |
TC012647 |
| D. plexippus |
DPOGS201666PA |
| A. aegypti |
AAEL007065 |
| N. vitripennis |
NV18390-PA |
| P. humanus |
PHUM523570-PA |
| B. mori |
BGIBMGA005347-TA |
| H. sapiens |
ENSP00000442980 |
| H. sapiens |
ENSP00000440005 |
| C. quinquefasciatus |
CPIJ004239 |
| S. invicta |
SI2.2.0_02007 |
| A. gambiae |
AGAP012014 |
| P. vanderplanki |
Pv.08895 |
| D. melanogaster |
FBgn0010348 |
| H. sapiens |
ENSP00000272102 |
| A. mellifera |
GB10675-PA |