MidgeBase gene description page [Pn.05975]
Outline
| Gene ID | Pn.05975 |
| Type | Protein coding gene |
| Scaffold | PnScaf5308 |
| Start | 233 |
| End | 1697 |
| Direction | - |
Sequence
Transcript: 1143 (bp)
ATGATCATTCATCGAGCTCAGAACTATACCTTAGGAGTCATCTTCGCGTGCAGGCTTGATGGCGCAATCCTCGGCATTAAAGCATTCCTGATCCCAGAAACCTGGTCAAAGCTTATCCAACCCAGCGTCTGGTACGAAGCAGTGGTGCAGTGCTTCTACTCACTCACCATCGGCATGGGTTCGATCATTATGTTCTCGAGCTACAACGAATTTGATCACAACATCTATCGAGATGCAACCATCGTTAGTGTGATGGACACCTTCTCGAGCATGCTCAGCGGCTTCACCATCTTCGCCATCCTCGGAAATTTGCACTGCAAGCTAGGCTTTAACAAAGATTTCTCAGAATTGGTCAAGAGTCCATCGGCATTAGCATTTGTCGCCTACCCCGAAGTCATTGCGAAAATCGAAAACCGACTTTACTTTCCACAGATACTGTCATTTACATTCTTCACTATGCTGTTTGTGTTAGGCGTTGGTTCGACTGTTGGTCTCATGAACAATCTGTCGACCAACCTAAAAGATTACTTTCCAAATGTCCGTTACTGGCTTTTTGCGGGTGTGGCTAGTATGATAGGATTCTTAATTGGCTTGCTTTATGTGACTCAAGGCGGAGGCCATATGGTTGATCTTGTCGACTACTTTGGAGGCTCATTCTTACTTTTTGCTCTCGCAACTGTGGAGCTGATTGGAGTCGTTTGGGTTTATGGAATTCAAGAATTCTGCTGGGACATTGAGTTTATGCTGAAGCGAAAAATGTCGCCTTACTGGAGAATTTCCTGGGCTATCGTGATGCCTTGTTTCCTTATTTTTATGTGCGGCGCCGCTATATTCAAAGCCGAGTTTCCAGCTGGTCAATCGAGTTATACACTTTTTGGCGGATGGTCGCTCTTTATTTTCGGCTGTGCTCAAGTTCCTCTGTGGATCTGCTGTCTTTTCTTTAAAACTGATTCCAACACTTTGCGAGCATTTGCAAAATATTTGACATCTCTGAACCCAGCATGGGGACCAGCAAATGCCTCCAAACGCAAGGAATGGATTCTCTTCAAAGAAGCAAAGAGACGGTCACGTGAAACCGACATTGCCAACCACAATCTCTTTTGGATCGGACAAAAATGGTGGGAGCTGACTGGTAAATTTAAA
Protein: 381 (aa)
MIIHRAQNYTLGVIFACRLDGAILGIKAFLIPETWSKLIQPSVWYEAVVQCFYSLTIGMGSIIMFSSYNEFDHNIYRDATIVSVMDTFSSMLSGFTIFAILGNLHCKLGFNKDFSELVKSPSALAFVAYPEVIAKIENRLYFPQILSFTFFTMLFVLGVGSTVGLMNNLSTNLKDYFPNVRYWLFAGVASMIGFLIGLLYVTQGGGHMVDLVDYFGGSFLLFALATVELIGVVWVYGIQEFCWDIEFMLKRKMSPYWRISWAIVMPCFLIFMCGAAIFKAEFPAGQSSYTLFGGWSLFIFGCAQVPLWICCLFFKTDSNTLRAFAKYLTSLNPAWGPANASKRKEWILFKEAKRRSRETDIANHNLFWIGQKWWELTGKFK
| Type | Start | End | Length |
| CDS |
236 |
729 |
494 |
| CDS |
796 |
1012 |
217 |
| CDS |
1076 |
1473 |
398 |
| CDS |
1664 |
1697 |
34 |
| intron |
730 |
795 |
66 |
| intron |
1013 |
1075 |
63 |
| intron |
1474 |
1663 |
190 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001659215 |
sodium/shloride dependent amino acid transporter [Aedes aegypti] gb|EAT39789.1| sodium/shloride dependent amino acid transporter [Aedes aegypti] |
6e-78 |
| InterPro |
IPR000175 |
Sodium:neurotransmitter symporter |
|
| Gene Ontology(BP) |
GO:0006836 |
neurotransmitter transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005328 |
neurotransmitter:sodium symporter activity |
|
| Pfam |
PF07954.6 |
Protein of unknown function (DUF1689) |
0.04 |
| Pfam |
PF14141.1 |
YqzM-like protein |
9.3 |
| Pfam |
PF00209.13 |
Sodium:neurotransmitter symporter family |
6.7e-62 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes