MidgeBase gene description page [Pn.05951]
Outline
| Gene ID | Pn.05951 |
| Type | Protein coding gene |
| Scaffold | PnScaf5283 |
| Start | 46130 |
| End | 47381 |
| Direction | - |
Sequence
Transcript: 1128 (bp)
ATGACTCAAGGAAAAGTTATCAAGTGTAAAGCTGCCGTCTCATGGGGTGCAAACGAGCCACTTTCCATAGAAGAAATTGAGGTAGCTCCTCCAAGAGAAGGAGAAGTTCGAGTAAAAATTGTCGCTTCTGGGATTTGCTTCACAGATATTTCTGCATCTCGAGGAAAAATCTTGGACGTAAAATTTCCAATTATTCTTGGACATGAGGCAGCTGGAATCGTTGAATCTGTTGGCGAAGGTGTCAACGACATTAGGGCTGGAGATCACATCATAACTCTCTTCCTTCCACAATGCAAAAAATGTCGTGTCTGTAAGCACGAAGACGCCAATACCTGTGAAGAATTCTTCGATGGAAGTCAAGCTCATGGGCTAATGGCTGATGGAACCTCAAGATTCTCATGCAAGGGAAGACAAATCTTACAATTCATGGGTACATCCACATTTACTGAATATTCAGTGTTGAAAGAGTTTAATGTCGCCAAGATAAATCCTCAGGCTCCCTTGGAGAAAGTCTGCCTTCTAAGTTGTGGATTTCCAACAGGCTACGGCGGTTCGATGAAGACAGTGAGCATTAAAAAGGGCTCCACCACAGCGGTGTGGGGATTAGGAACAATCGGCCTCGCAGCCCTCTTTGGATGTGCCAAATCGGGAGCTTCAAAAATAATTGGAATCGACACCAATGATGCTAAAGAAAAGCTTGCCAGAGAATTGGGTTGCACTGATTTCGTTAATCCGAAAGATGTTTCCGTCTCTATGCAAAAGTATTTGGCGGAAAAATTTGGTCCGATTGATTACACTTTCGAATGCATCGGATCCATTCAGACAATGAAACAGGCTTTCCAGTCGGCTGCTAAAGGAAATGGAGTTTGTGTATTGATCGGCGTCAGTCCACAAGAGCAAGACATAACTTTATCACCAATTGACTTTTTATTGGGCCGTAAACTGACTGGTGAACTCTTCGGTTCGTACAAAGGTGTCGATGATGTCCCGAAGCTTGTGGATGAATACATGAAGGGAGAGCTACCGCTTGAGAAATTCATAACTCATAACATAGAACTCGACCAAATTAATGAAGGATACGAGTTGTTGAAAAAAGGAGAGTGCATTCGTTGTGTCATATTAAATAAA
Protein: 376 (aa)
MTQGKVIKCKAAVSWGANEPLSIEEIEVAPPREGEVRVKIVASGICFTDISASRGKILDVKFPIILGHEAAGIVESVGEGVNDIRAGDHIITLFLPQCKKCRVCKHEDANTCEEFFDGSQAHGLMADGTSRFSCKGRQILQFMGTSTFTEYSVLKEFNVAKINPQAPLEKVCLLSCGFPTGYGGSMKTVSIKKGSTTAVWGLGTIGLAALFGCAKSGASKIIGIDTNDAKEKLARELGCTDFVNPKDVSVSMQKYLAEKFGPIDYTFECIGSIQTMKQAFQSAAKGNGVCVLIGVSPQEQDITLSPIDFLLGRKLTGELFGSYKGVDDVPKLVDEYMKGELPLEKFITHNIELDQINEGYELLKKGECIRCVILNK
| Type | Start | End | Length |
| CDS |
46133 |
46719 |
587 |
| CDS |
46780 |
47185 |
406 |
| CDS |
47247 |
47381 |
135 |
| intron |
46720 |
46779 |
60 |
| intron |
47186 |
47246 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EGI59520 |
Alcohol dehydrogenase class-3 [Acromyrmex echinatior] |
1e-114 |
| InterPro |
IPR011032 |
GroES-like |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013154 |
Alcohol dehydrogenase GroES-like |
|
| InterPro |
IPR002328 |
Alcohol dehydrogenase, zinc-type, conserved site |
|
| InterPro |
IPR013149 |
Alcohol dehydrogenase, C-terminal |
|
| InterPro |
IPR002085 |
Alcohol dehydrogenase superfamily, zinc-type |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF00107.21 |
Zinc-binding dehydrogenase |
1.3e-18 |
| Pfam |
PF02826.14 |
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
0.066 |
| Pfam |
PF08240.7 |
Alcohol dehydrogenase GroES-like domain |
4.8e-27 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01883 |