MidgeBase gene description page [Pn.05947]
Outline
| Gene ID | Pn.05947 |
| Type | Protein coding gene |
| Scaffold | PnScaf5283 |
| Start | 39093 |
| End | 39718 |
| Direction | - |
Sequence
Transcript: 498 (bp)
ATGGCAGACGTTTTAGATATTGATAATGCTGAAGACTTTGAGGTTGATGATGATGGCGATCAGGGAATAATGAGATTGAAGGAAAAGGCAAAGAAGAAAAAAGGAAGAGGCTTTGGGACTGAAACTGTCCACCGCGAGCCCATGGACTATGAGAGTGTACGGGACGATACAAATGAGGATGTCGAACCGGGCCCGCAAAGATCTGTGGAAGGCTGGATTCTTTTCATCACATCAATTCACGAAGAAGCTCACGAGGACGACATCCAAGAAAAGTTTTGCGAGTTTGGAGACATCAAGAACATTCATTTGAATCTCGATCGTAGAACTGGCTTTCTAAAAGGATACGCTCTGGTTGAATACGAAACATACAAACAAGCATTGGGCGCAAAGGAAGCCATGGACGGCGCAGAGATTCTCGGGCAAAAGATAAGCGTCGATTGGTGCTTCGTTAAAGGTCCGAAAAGATCAAGAAAGGGAGTCGATCGCAAAAAGAAGCAG
Protein: 166 (aa)
MADVLDIDNAEDFEVDDDGDQGIMRLKEKAKKKKGRGFGTETVHREPMDYESVRDDTNEDVEPGPQRSVEGWILFITSIHEEAHEDDIQEKFCEFGDIKNIHLNLDRRTGFLKGYALVEYETYKQALGAKEAMDGAEILGQKISVDWCFVKGPKRSRKGVDRKKKQ
| Type | Start | End | Length |
| CDS |
39096 |
39391 |
296 |
| CDS |
39462 |
39602 |
141 |
| CDS |
39658 |
39718 |
61 |
| intron |
39392 |
39461 |
70 |
| intron |
39603 |
39657 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_316392 |
AGAP006365-PA [Anopheles gambiae str. PEST] gb|EAA11513.3| AGAP006365-PA [Anopheles gambiae str. PEST] |
4e-71 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| InterPro |
IPR008111 |
RNA-binding motif protein 8 |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
5.3e-15 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
3.4e-09 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
1.5e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000333001 |
| H. sapiens |
ENSP00000462894 |
| T. castaneum |
TC005086 |
| D. melanogaster |
FBgn0033378 |
| A. gambiae |
AGAP006365 |
| P. vanderplanki |
Pv.01893 |
| C. quinquefasciatus |
CPIJ007339 |
| N. vitripennis |
NV15939-PA |
| H. melpomene |
HMEL011247-PA |
| P. humanus |
PHUM390470-PA |
| M. musculus |
ENSMUSG00000078184 |
| M. musculus |
ENSMUSG00000038374 |
| A. aegypti |
AAEL006748 |
| A. mellifera |
GB17273-PA |
| D. plexippus |
DPOGS204008PA |
| H. sapiens |
ENSP00000358313 |
| H. sapiens |
ENSP00000463058 |