MidgeBase gene description page [Pn.05943]
Outline
| Gene ID | Pn.05943 |
| Type | Protein coding gene |
| Scaffold | PnScaf5283 |
| Start | 26637 |
| End | 27994 |
| Direction | + |
Sequence
Transcript: 996 (bp)
ATGGCTGAAGCAGCTAGCGAAAATACCAAGCCAAAATCTTCGGACTTCAAGCGAGAAGCGTCATGGCCATCAGTGCTCTTCTTTATTCACTTGAATATTTTAGGGCTGTATGGAATTGTCATTCTTTTCACACACACCAAGATAATAACCATTTTGTTTTCCTTCATTCTTACCATAATGGGAATTTATGGAACAACGGTTGGCGCACATAGACTATGGACTCATAGAACTTTCAGGGCAAACGGTCCTCTTAGATTTTTATTGATGATATGTCAAACGATGGCTGGCCAGGGTTCAATTTATGATTGGGTGCGATCACATCGTCTGCATCACAAAACATTCAAAACGGCCGATGATCCGTTTTATAGCGACAAAGATTTTCTCTCGGCCCAAATATTTGCGCACATCAGGAAATTGAGTCCGAGACAAGAAAAGCTCATTGAAACTGTAGACATGAAGGATATTGAAGAAGACGGCATCGTCATGTTTCAAAAGAGGTTTTACTGGATTCTGTACCTCATTCTGTTTGTTCTTCTGCCGATAAATGCACCTCTCGAGTATTGGGATGACACAGTGCAGGCTGCAATTTTTGTAGCATTTTCCTTGAGATACTTGATTGTAATTAATTTTGCATGGCTTGTGAACTCAGCACATTTTATTTGGGCACTCGACAAAAATCATAAACAGTCCGATTCTAACATGGTGTTCATTGTAACCAAGAGCTACTGGCCGCAATATCACTATCTCATTCCCTATGACTATCAAACCGGCGAATTCGGAAATTATGGAGAAGGGACATCAACGAGCCTCATAAGAATATTTGCTGCCATGGGATGGGCAACTGAACTGAAAACCGTTACATCTGATGCTGTTAGAAAAGGACTTGCAATGGCTGTCGATACCGGCAGGGAGATCGTTGACTGCATAAAGGAGGCTAACGATGAAGAGATAATTAAATTGCCGTCTGATCACTATCTCAAGAGAGAGAACTTAACA
Protein: 332 (aa)
MAEAASENTKPKSSDFKREASWPSVLFFIHLNILGLYGIVILFTHTKIITILFSFILTIMGIYGTTVGAHRLWTHRTFRANGPLRFLLMICQTMAGQGSIYDWVRSHRLHHKTFKTADDPFYSDKDFLSAQIFAHIRKLSPRQEKLIETVDMKDIEEDGIVMFQKRFYWILYLILFVLLPINAPLEYWDDTVQAAIFVAFSLRYLIVINFAWLVNSAHFIWALDKNHKQSDSNMVFIVTKSYWPQYHYLIPYDYQTGEFGNYGEGTSTSLIRIFAAMGWATELKTVTSDAVRKGLAMAVDTGREIVDCIKEANDEEIIKLPSDHYLKRENLT
| Type | Start | End | Length |
| CDS |
26637 |
26796 |
160 |
| CDS |
26909 |
27039 |
131 |
| CDS |
27148 |
27353 |
206 |
| CDS |
27410 |
27634 |
225 |
| CDS |
27718 |
27991 |
274 |
| intron |
26797 |
26908 |
112 |
| intron |
27040 |
27147 |
108 |
| intron |
27354 |
27409 |
56 |
| intron |
27635 |
27717 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657081 |
stearoyl-coa desaturase [Aedes aegypti] gb|EAT45074.1| stearoyl-coa desaturase [Aedes aegypti] |
1e-146 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
3.7e-07 |
| Pfam |
PF09685.5 |
Tic20-like protein |
0.84 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA010613-TA |
| D. melanogaster |
FBgn0039755 |
| A. gambiae |
AGAP003050 |
| N. vitripennis |
NV14981-PA |
| H. melpomene |
HMEL002311-PA |
| A. aegypti |
AAEL003611 |
| P. vanderplanki |
Pv.01889 |
| P. humanus |
PHUM128320-PA |
| D. plexippus |
DPOGS213663PA |
| T. castaneum |
TC016399 |