MidgeBase gene description page [Pn.05933]
Outline
| Gene ID | Pn.05933 |
| Type | Protein coding gene |
| Scaffold | PnScaf5271 |
| Start | 1014 |
| End | 3276 |
| Direction | + |
Sequence
Transcript: 1077 (bp)
ATGGCTTCGGGCAGTGAGGCAAGCAGGAAGGTCGCTCTCATCACTGGCATCACCGGGCAGGATGGCTCGTACCTGGCGGAGTTTCTCCTCAAAAAAGGCTACCAAGTGCACGGCATCATCCGGCGGTCATCGAGCTTCAACACGCACCGGATCGAGCACCTGTACCAAAACCCGGTGTCGCACCAGGAGGGCGCCTCCTTCAAGCTCCACTACGGCGACATGACGGACAGCTCGTGTCTCGTCAAAATCATCATGCAGGTCCGCCCGACGGAGGTCTACAACCTCGCGGCGCAGTCGCACGTGAAGATCTCGTTCGACCTCTCCGAGTACACGGCGGAGGTGGATGGCGTGGGCACGCTGCGCCTCCTCGACGCCATCCGGACGTGCGGCCTCGAAAAGCAGGTGCGCTTCTACCAGGCCTCGACCTCGGAGCTGTACGGCAAGGTGGCGGAGACGCCGCAGAACGAGCGCACGCCCTTCTACCCGCGCAGCCCGTACGCGGCCGCCAAGCTCTACGGCTACTGGATCGTCGTGAATTACCGCGAGGCGTACGACATGTACGCGTGCAACGGCATCCTCTTCAACCACGAGTCGCCGCGACGCGGCGAAAACTTCGTCACGCGCAAAATCACGCGCACGGTGGCGAAGATCTCGCTCGGCCAGCAGGACGTCCTCGAGCTCGGCAACCTCGACTCGAAGCGCGACTGGGGCCATGCGCGCGACTACGTCGAGGCCATGTGGATGATGCTGCAGCTGGAGCGGCCCGAGGACTTTGTCATCGCCACCGGCGAGACGCACAGCGTGCGCGAGTTCGTCGAGCGCGCCTTTGCCTACGTCGGCGCCGAGATCGAGTGGCGAGGCAGCGGCGTCGAAGAGGTGGGCGTCGATAAGGCGTCCGGACGGGTACGCGTGCGAATCAATCCAAAGTACTTTCGGCCCACCGAGGTAGACCTGCTGCTCGGCGACGCCGGAAAAGCGCGGCGCATTCTCAACTGGAAGCCGAAGTGCGGCTTCGATGAGCTCGTGAAAGAAATGATGGCCGCCGACATCGAGCTCATGAAGAAAAACCCGCTGGCG
Protein: 359 (aa)
MASGSEASRKVALITGITGQDGSYLAEFLLKKGYQVHGIIRRSSSFNTHRIEHLYQNPVSHQEGASFKLHYGDMTDSSCLVKIIMQVRPTEVYNLAAQSHVKISFDLSEYTAEVDGVGTLRLLDAIRTCGLEKQVRFYQASTSELYGKVAETPQNERTPFYPRSPYAAAKLYGYWIVVNYREAYDMYACNGILFNHESPRRGENFVTRKITRTVAKISLGQQDVLELGNLDSKRDWGHARDYVEAMWMMLQLERPEDFVIATGETHSVREFVERAFAYVGAEIEWRGSGVEEVGVDKASGRVRVRINPKYFRPTEVDLLLGDAGKARRILNWKPKCGFDELVKEMMAADIELMKKNPLA
| Type | Start | End | Length |
| CDS |
1014 |
1073 |
60 |
| CDS |
1922 |
2119 |
198 |
| CDS |
2455 |
3273 |
819 |
| intron |
1074 |
1921 |
848 |
| intron |
2120 |
2454 |
335 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308963 |
AGAP006783-PA [Anopheles gambiae str. PEST] gb|EAA04772.3| AGAP006783-PA [Anopheles gambiae str. PEST] |
1e-175 |
| InterPro |
IPR001509 |
NAD-dependent epimerase/dehydratase |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR006368 |
GDP-mannose 4,6-dehydratase |
|
| Gene Ontology(BP) |
GO:0019673 |
GDP-mannose metabolic process |
|
| Gene Ontology(BP) |
GO:0044237 |
cellular metabolic process |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0008446 |
GDP-mannose 4,6-dehydratase activity |
|
| Gene Ontology(MF) |
GO:0050662 |
coenzyme binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
2.4e-70 |
| Pfam |
PF04321.12 |
RmlD substrate binding domain |
5.8e-08 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.013 |
| Pfam |
PF13950.1 |
UDP-glucose 4-epimerase C-term subunit |
0.022 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
3.9e-05 |
| Pfam |
PF05368.8 |
NmrA-like family |
0.0029 |
| Pfam |
PF07993.7 |
Male sterility protein |
0.013 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
0.0098 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000436726 |
| T. castaneum |
TC004005 |
| A. gambiae |
AGAP006783 |
| H. melpomene |
HMEL007890-PA |
| D. plexippus |
DPOGS202722PA |
| H. sapiens |
ENSP00000370194 |
| P. humanus |
PHUM474430-PA |
| C. quinquefasciatus |
CPIJ012919 |
| A. aegypti |
AAEL014961 |
| B. mori |
BGIBMGA008433-TA |
| P. vanderplanki |
Pv.04725 |
| C. quinquefasciatus |
CPIJ018191 |
| S. invicta |
SI2.2.0_10925 |
| N. vitripennis |
NV16873-PA |
| A. mellifera |
GB19686-PA |
| D. melanogaster |
FBgn0031661 |