MidgeBase gene description page [Pn.05919]
Outline
| Gene ID | Pn.05919 |
| Type | Protein coding gene |
| Scaffold | PnScaf5251 |
| Start | 9435 |
| End | 9991 |
| Direction | + |
Sequence
Transcript: 483 (bp)
ATGAACAAGATTGCGTCAAAGGGAAAGAATTTCCTGCTCCTTGGTCAGTGTCTGCCTTGTCTCAAGCAAAATGCATCGAAAGTTCGCGTGAGAAGAATGGTTTTAGACACAAATATCAACATGTATTTTAGGGAGGATAAAATTTTCTACGTGCACGATCCGAATAAAGTCTGCAAGTCTGGCGATGTGGTGCTAATAAAGGAGCTCGACAAGAAATTAACAACTTTAATTACACATTCGATAGAAGAAATTGTTTTCCCACTCGGCGACGTGACGGATCCGATTACAGGCAAGAAGTGCTTTGTCGGAAAGTACAGAGACCAAATCGAAGAGGCGAACCAGATGTACGGAAAGAAGCCGACTGCATTTGACTACGACAAGGCGCCGCCGCGAGGAAAGCTCGAAGGCAAGCAGGACTTCTCGCACGGACCGACCTACCTGAAGACTCACGAGAGTGGCGAAGACGAGCCGTTTGCGGTTCAG
Protein: 161 (aa)
MNKIASKGKNFLLLGQCLPCLKQNASKVRVRRMVLDTNINMYFREDKIFYVHDPNKVCKSGDVVLIKELDKKLTTLITHSIEEIVFPLGDVTDPITGKKCFVGKYRDQIEEANQMYGKKPTAFDYDKAPPRGKLEGKQDFSHGPTYLKTHESGEDEPFAVQ
| Type | Start | End | Length |
| CDS |
9435 |
9557 |
123 |
| CDS |
9629 |
9988 |
360 |
| intron |
9558 |
9628 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002005069 |
GI19260 [Drosophila mojavensis] gb|EDW09004.1| GI19260 [Drosophila mojavensis] |
1e-61 |
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| Pfam |
PF00366.15 |
Ribosomal protein S17 |
0.0014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000285298 |
| B. mori |
BGIBMGA004013-TA |
| P. humanus |
PHUM378050-PA |
| M. musculus |
ENSMUSG00000034211 |
| T. castaneum |
TC008690 |
| H. sapiens |
ENSP00000390331 |
| N. vitripennis |
NV14404-PA |
| D. plexippus |
DPOGS214387PA |
| S. invicta |
SI2.2.0_06156 |
| H. melpomene |
HMEL003457-PA |
| D. melanogaster |
FBgn0034986 |
| A. mellifera |
GB10343-PA |
| C. quinquefasciatus |
CPIJ004582 |
| A. gambiae |
AGAP005118 |
| P. vanderplanki |
Pv.03075 |
| H. sapiens |
ENSP00000401349 |