MidgeBase gene description page [Pn.05833]
Outline
| Gene ID | Pn.05833 |
| Type | Protein coding gene |
| Scaffold | PnScaf5180 |
| Start | 19817 |
| End | 21824 |
| Direction | - |
Sequence
Transcript: 1794 (bp)
ATGAATCTAAACATAAAATTTGACAATCTTGTATATCGAACGACAAAGTTTGGGCTCTTCAAACGAGATGAGAAAATAATTTTGAAAAGCATAAGCGGTGAGTTTCGGGCCTTTGAGCTCTCAGCCATCATGGGACCGAGTGGCTGTGGCAAAAGTACCCTCCTCAACATTCTTTCGACGTTCATGACCGACGGCATCTCGGGATCGATCACAATCAACGGTGAAAAATGGAATCGAACGAAGTTTAAGAAAAAATTTGCGTACATCATGCAGGAAGAGAATTTACACGCCGTCTTGACCGTCAAAGAGGCAATGAATTATTCTATTAAACTGAAAACGGGCAGTTCTCTGACTGAAAAGCAGCAGCAAAAGAAGATCAATTCAATATTGGACACACTCAAGCTAAGTAATCGCCTCAACACATATGCGCAGCATCTCTCCGGAGGACAGCAAAAGAGGTTGTCGATTGCTCTTGAACTCGTAGATGATCCGCAGGTCTTATTCTTGGACGAGTGCACCACAGGGCTGGATAGTGTTGCATCAGCACATTGTATACAGTTTCTTAAAAAACTGGCAAACGAAGGAAGAACAGTGATTTGCACCATACACACACCATCGGCGTTGATGTTTCAAATATTCGATCACATTTATGCACTCGCGTCAGGTCATTGCATTTATTCTGGTTCTTCAGCAAATCTCGTTCCTTTTCTTAAAGAACTCGGTCTGATTTGCCCCGAGACATATAACCCGGCAGATTTCCTTCTCGAAATAGCAAACAACGATTACGGTTCGCAAAATATTCGACTTACAAACAACATTGAAAATGGAAAAAATGAATTTTATCGCAACCAAGCTCTCAACTGCTACTTGAACAACAACAATTGTGACGTTAATTTCCAAAAACTTACCAACGGAACGACCTTGAGTGAAGAATCATCATCAACATCGCCGCCGCCGCTACCCTCATCGTTTATTCATCAATTAGCTCTGTTGGTTTCACGAAACTATGTAATTTCGCACCGCAATATAACCTTAATAATTCAGCGTTTGTTAATTTCTCTCATCGTGGGCCTTCTCGTCGGGGCAATGTACATCGATATAGGCTCGGAGGCTTCGCACATCTTCAGCACGTTCAAGTATATTTTCGTCTCTGCCTTCTTCCTCCTTTACATCTCGTATTACTCGCAGCAGACTTCATTTCCATTAGAATTGCCGATCGTGAAGAGAGAAATTTTTAACCGCTGGTATTCATCGTCAGCCTACTACTTGGCCTTGTCTCTCACCGACATTCCGATGACAATAATCTGCACCTTCATCTACCTTGGCGTAACCTATTTCATGACAAATCAGCCACTTGATGTCGAGCGCCTTGTAAGCTTCTTCTCAATCGGTTTGCTTACTTCTTTTGTGGCTCAGGGCTTCGGTCACTTCGCTGGCTCGCTGTTTGAGTTACAGGGTACACTGACTTTTGCAGCTATTTTCTTGCCGTTGTATGGAATATTCTCGGGCATGTTTATTCTCATGAAAGACACACACTGGCTGTTTCATTGGATCTTTGAAATTTCATTCATAAAACACTCTTTGGACGCTGGCGCAACAGTAATTCTAGGCTGGAATCGGGAGAAGCTACAATGTAACGAAGCCTACTGCCACTATCAAATACCAAAAAAGTTTCTCAGTACCATCGACTTGAATGAAAACTTGTCATTATCTATTCAAGCACTTGTGATATTTCTCATCGTTTTCCGTCTCACGGCTTTCATCATAATGAAATATCGACTGCATAAATCAAAA
Protein: 598 (aa)
MNLNIKFDNLVYRTTKFGLFKRDEKIILKSISGEFRAFELSAIMGPSGCGKSTLLNILSTFMTDGISGSITINGEKWNRTKFKKKFAYIMQEENLHAVLTVKEAMNYSIKLKTGSSLTEKQQQKKINSILDTLKLSNRLNTYAQHLSGGQQKRLSIALELVDDPQVLFLDECTTGLDSVASAHCIQFLKKLANEGRTVICTIHTPSALMFQIFDHIYALASGHCIYSGSSANLVPFLKELGLICPETYNPADFLLEIANNDYGSQNIRLTNNIENGKNEFYRNQALNCYLNNNNCDVNFQKLTNGTTLSEESSSTSPPPLPSSFIHQLALLVSRNYVISHRNITLIIQRLLISLIVGLLVGAMYIDIGSEASHIFSTFKYIFVSAFFLLYISYYSQQTSFPLELPIVKREIFNRWYSSSAYYLALSLTDIPMTIICTFIYLGVTYFMTNQPLDVERLVSFFSIGLLTSFVAQGFGHFAGSLFELQGTLTFAAIFLPLYGIFSGMFILMKDTHWLFHWIFEISFIKHSLDAGATVILGWNREKLQCNEAYCHYQIPKKFLSTIDLNENLSLSIQALVIFLIVFRLTAFIIMKYRLHKSK
| Type | Start | End | Length |
| CDS |
19820 |
20126 |
307 |
| CDS |
20198 |
20229 |
32 |
| CDS |
20370 |
21824 |
1455 |
| intron |
20127 |
20197 |
71 |
| intron |
20230 |
20369 |
140 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653360 |
abc transporter [Aedes aegypti] gb|EAT39580.1| abc transporter [Aedes aegypti] |
1e-146 |
| InterPro |
IPR020064 |
ABC transporter, G1-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR013525 |
ABC-2 type transporter |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13558.1 |
Putative exonuclease SbcCD, C subunit |
0.052 |
| Pfam |
PF13207.1 |
AAA domain |
0.022 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
0.019 |
| Pfam |
PF13481.1 |
AAA domain |
0.0096 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.099 |
| Pfam |
PF00910.17 |
RNA helicase |
0.033 |
| Pfam |
PF01061.19 |
ABC-2 type transporter |
5.9e-24 |
| Pfam |
PF13401.1 |
AAA domain |
0.0038 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.038 |
| Pfam |
PF13521.1 |
AAA domain |
0.15 |
| Pfam |
PF03215.10 |
Rad17 cell cycle checkpoint protein |
0.00032 |
| Pfam |
PF01637.13 |
Archaeal ATPase |
0.0025 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.011 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.06 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
0.063 |
| Pfam |
PF00005.22 |
ABC transporter |
3.2e-21 |
| Pfam |
PF13238.1 |
AAA domain |
0.034 |
| Pfam |
PF13476.1 |
AAA domain |
0.00011 |
| Pfam |
PF13173.1 |
AAA domain |
0.0031 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
5.6e-05 |
| Pfam |
PF13304.1 |
AAA domain |
1.9e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.15885 |
| Pn.00864 |
| Pn.02964 |
| Pn.00866 |
| Pn.04052 |
| Pn.15693 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ007190 |
| P. humanus |
PHUM154210-PA |
| C. quinquefasciatus |
CPIJ019125 |
| H. melpomene |
HMEL006781-PA |
| P. humanus |
PHUM610130-PA |
| H. melpomene |
HMEL014574-PA |
| B. mori |
BGIBMGA005203-TA |
| D. plexippus |
DPOGS204358PA |
| A. mellifera |
GB17229-PA |
| A. aegypti |
AAEL013372 |
| C. quinquefasciatus |
CPIJ012364 |
| H. sapiens |
ENSP00000339744 |
| P. vanderplanki |
Pv.17069 |
| P. vanderplanki |
Pv.17417 |
| D. melanogaster |
FBgn0031516 |
| N. vitripennis |
NV14844-PA |
| P. vanderplanki |
Pv.05629 |
| H. sapiens |
ENSP00000420245 |
| H. sapiens |
ENSP00000381464 |
| H. sapiens |
ENSP00000420100 |
| D. plexippus |
DPOGS205649PA |
| H. sapiens |
ENSP00000381467 |
| C. quinquefasciatus |
CPIJ801608 |
| T. castaneum |
TC007467 |
| A. gambiae |
AGAP009850 |
| H. sapiens |
ENSP00000381475 |
| A. aegypti |
AAEL008672 |
| H. sapiens |
ENSP00000291524 |
| T. castaneum |
TC007466 |
| D. plexippus |
DPOGS212638PA |
| C. quinquefasciatus |
CPIJ007191 |
| P. vanderplanki |
Pv.07334 |
| B. mori |
BGIBMGA005202-TA |
| D. melanogaster |
FBgn0031220 |
| P. vanderplanki |
Pv.07333 |
| T. castaneum |
TC007074 |
| H. melpomene |
HMEL014575-PA |
| H. melpomene |
HMEL006594-PA |
| H. sapiens |
ENSP00000406874 |
| H. melpomene |
HMEL006780-PA |
| B. mori |
BGIBMGA005094-TA |
| P. vanderplanki |
Pv.06644 |
| D. melanogaster |
FBgn0031449 |
| N. vitripennis |
NV16927-PA |
| A. aegypti |
AAEL008629 |
| D. plexippus |
DPOGS212605PA |
| H. sapiens |
ENSP00000414541 |
| P. vanderplanki |
Pv.07332 |
| S. invicta |
SI2.2.0_00064 |
| N. vitripennis |
NV14845-PA |
| H. sapiens |
ENSP00000343820 |
| D. melanogaster |
FBgn0025683 |
| B. mori |
BGIBMGA005226-TA |
| A. mellifera |
GB19012-PA |
| T. castaneum |
TC008454 |
| D. plexippus |
DPOGS212609PA |
| C. quinquefasciatus |
CPIJ802036 |
| H. sapiens |
ENSP00000304111 |
| H. melpomene |
HMEL005297-PA |
| D. plexippus |
DPOGS205105PA |
| T. castaneum |
TC007047 |
| M. musculus |
ENSMUSG00000024030 |
| P. humanus |
PHUM349840-PA |
| A. aegypti |
AAEL008138 |
| P. humanus |
PHUM347630-PA |
| P. humanus |
PHUM602230-PA |
| A. mellifera |
GB16644-PA |
| P. humanus |
PHUM453210-PA |
| H. sapiens |
ENSP00000417667 |
| H. sapiens |
ENSP00000434318 |
| S. invicta |
SI2.2.0_03712 |
| N. vitripennis |
NV10274-PA |
| A. gambiae |
AGAP009463 |
| A. mellifera |
GB11259-PA |
| A. aegypti |
AAEL008635 |
| H. sapiens |
ENSP00000354995 |
| T. castaneum |
TC008293 |
| D. melanogaster |
FBgn0032167 |
| A. mellifera |
GB12359-PA |
| N. vitripennis |
NV11347-PA |
| N. vitripennis |
NV10033-PA |
| A. gambiae |
AGAP001858 |
| D. melanogaster |
FBgn0020762 |