MidgeBase gene description page [Pn.05756]
Outline
| Gene ID | Pn.05756 |
| Type | Protein coding gene |
| Scaffold | PnScaf5105 |
| Start | 7460 |
| End | 8415 |
| Direction | + |
Sequence
Transcript: 882 (bp)
ATGGATGCATCTACTTCAAAAGACGAGAAGCTAACAGAGACCCAGCTGGAATTACAGAACTTCTTTCCAAAAGTCCTTGAGGAAATAAAGAAAATAAAAGTTATTGAACCGGGAAATCAGCTTTTACCTCTGGCTCGCATAAAGAAGATTATGAAACTCGATGAGGACGTGAAAATGATATCCGCTGAGGCACCACTGCTATTTGCAAAAGCCACCGAAATTTTCATCCACGAGCTCACTTTGAGAGCTTGGCTTCACACAGAGGACAACAAGAGGAGAACCCTGCAGAGAAATGACATCGCAATGGCGATAAGCAAATACGACCAATTTGATTTTCTCATTGACATCGTCCCACGAGATGAAATTAAACCGAAGAAGGAGTCGGAAAATAAGTCAACGGTGCAGGAAGTGTTTTACGTGCAAGCGCCTACACAACAACTTCCTCAAACACAATTGATAGCAACGCCGCAAGCAGCCCAAGCAACGCAAACCATTCAGCTACAGAACGGAATCCAGACAACACCCACGCAAAATATTATTCTTCAAAGCCCCACTCAACAAGCGATTCCCGGCGTCATTCAACTCGGCAATCCAAACCAGCAGATTCAACTCGTTCAACAAGTGATTAATCAAAATGGCGAAATCTCTCAAATTCCCGTTCAGATGACGCAACAGCAACTTTCAATGCTTCGTTCGCAAATGACGGGAGTCGGAACTCCGCAACTTATTGTGGCTCCTCAAACCATCTTTCAAACACAAACAGGACAAAACATTGCCATTCCATTGAACATTGGACAGCAAGGAATTTTCATCAACCCACAAACGACGACAATTCAACAGCCATCACAGCCACAGCAGCAGCAGCAGACTAAAGAGAATCAG
Protein: 294 (aa)
MDASTSKDEKLTETQLELQNFFPKVLEEIKKIKVIEPGNQLLPLARIKKIMKLDEDVKMISAEAPLLFAKATEIFIHELTLRAWLHTEDNKRRTLQRNDIAMAISKYDQFDFLIDIVPRDEIKPKKESENKSTVQEVFYVQAPTQQLPQTQLIATPQAAQATQTIQLQNGIQTTPTQNIILQSPTQQAIPGVIQLGNPNQQIQLVQQVINQNGEISQIPVQMTQQQLSMLRSQMTGVGTPQLIVAPQTIFQTQTGQNIAIPLNIGQQGIFINPQTTTIQQPSQPQQQQQTKENQ
| Type | Start | End | Length |
| CDS |
7460 |
8116 |
657 |
| CDS |
8188 |
8412 |
225 |
| intron |
8117 |
8187 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001870976 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS34982.1| conserved hypothetical protein [Culex quinquefasciatus] |
8e-61 |
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR003958 |
Transcription factor CBF/NF-Y/archaeal histone |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
4.8e-12 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
1.5e-21 |
| Pfam |
PF02969.12 |
TATA box binding protein associated factor (TAF) |
0.094 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17993-PA |
| H. sapiens |
ENSP00000404427 |
| D. melanogaster |
FBgn0029905 |
| H. sapiens |
ENSP00000361737 |
| P. humanus |
PHUM204110-PA |
| H. sapiens |
ENSP00000361734 |
| H. sapiens |
ENSP00000414299 |
| H. sapiens |
ENSP00000396620 |
| H. sapiens |
ENSP00000436710 |
| H. sapiens |
ENSP00000397647 |
| H. melpomene |
HMEL013211-PA |
| T. castaneum |
TC009586 |
| H. sapiens |
ENSP00000408867 |
| A. gambiae |
AGAP000441 |
| H. sapiens |
ENSP00000361754 |
| M. musculus |
ENSMUSG00000032897 |
| C. quinquefasciatus |
CPIJ010882 |
| H. sapiens |
ENSP00000361738 |
| H. sapiens |
ENSP00000312617 |
| H. sapiens |
ENSP00000408315 |
| H. sapiens |
ENSP00000361736 |
| H. sapiens |
ENSP00000416403 |
| D. plexippus |
DPOGS203547PA |
| H. sapiens |
ENSP00000409219 |
| P. vanderplanki |
Pv.00526 |