MidgeBase gene description page [Pn.05726]
Outline
| Gene ID | Pn.05726 |
| Type | Protein coding gene |
| Scaffold | PnScaf5072 |
| Start | 6387 |
| End | 8435 |
| Direction | + |
Sequence
Transcript: 1974 (bp)
ATGGAACAAGACGAAGTCTTAAACAACGCAGTTGAAATGAGTGATTCTCAAACACAACATCATCCAAGTGTTATTCTTCACTTAGATATCGACTATTTCTATGCCCAAGTTGAAGAAGTTTTGAAGCCCGAACTGAAGACAAGACCTTTTGGAGTTAAGCAAGGCTTGAATATCGTAACGTGCAACTATTTGGCTCGCGATAAAGGCGTCGGGAAATGGAAACCACTCAAAGAGTGCTTGGAAAAGTGCCCCGAACTGGTAGTTGTAAATGGAGAGGATTTGTCAAACTACAAAGTTTATTCCAAGCGAATAAGCGACGTTCTTCACGTACTGGGATTTGGAGCGACCGAGAGAATGGGCCTCGACGAGCACTTTATTGACATTACAAAAGAGATTGAAAAGGAATTGGAATGTGATAACACTAGTGAGAAACGGCACTTCGTTGGCCCAATATTTCCTGACGAGAGAGCATTTGACGAATGTACGTGTGGCTGCAGACAAAGACTCATGATTGGTACAGAAATTGCGTTTCGAATCCGCAAAAAGTTGCTCGATGAACTTAAACTTACGTGTTCCGTTGGAATTGCTCACAATAAACTCCTTGCGAAACTCGTTGGTCAAATGAACAAACCCAACAATCAGACAGTCCTTGCACCTACGGCAGCAAAAGTTTTTATGGCGAGTTTAGAGAGTCTTCGCACTATTACTGGAATTGGCGAGAAAACTGCAGCAAAAATAGAAGAACTCGGCATTAAGACAATTGATCATTTGCAAAATTGTGAAATTTCAACGCTTCAAAAGATATTTGGTAGTGATATGGCAACGCGACTTAAAGAGATGTCACTGGGCATTGACAAGTCAGAATTTAAACCTTCCGGGAAGCCCAAAACAGTCGGTCTCGAAGACTCATTTCGTCCAATCTCAATACGTAGTGATGCAGCGGAAAAGTTTCAAGCTCTCTTATCTCGACTTATGATTCAAATTCAAGACGATGGTCGAATACCGCAATCGATAAAAGTAACAGTTAGAAAGTATGATCCAGTGAAGAAAAATAGTATTCGAGAGACAAAACAGTGTGCACTAACGCCATCTCTTTTCCGATGTTCTGACGGAAAAATTCAATTGACTGAGGGTGCTGAACAAAAAATTATCAAAAATGTTTTGATGTTGTTCGATCGAATGGTGGATTTAAAACAGCAATTTAATATTACTCTGTTGGGACTGTGCATGAGTAAATTCCAAGAACAAAAAAGAGGTCCTGGTTCAATCGCAAATTATCTGATGAAGAAGCAAGATGTTGAGGTTCAGTCAATTACTAATTTGAGCAATGAAACAAATGGCTCATCGTTTAACGATAGCTTTAGATCGAAGACCGCTTCTCCTTCATCTTCGTTGATGGACTTTGAAACGATTTCAAACAATTCACTCGATCTTTCGGGATCAGAAGAGTCAGAATTGGAGCCATCGCCTAAGAAACGCAAAAAAATCAGTTTACTTCTCGTGGCCAGGAATCGTCGATATTCGAGTAATGATGATATAGCGTCGCCTAGTAAATTGAATGTTTCGGACCTTCACTTAAATAGCACTTTTGAATCGACAAGTGAGTCAATTCGAACAACTTCAACGCCAAATCGAGTTATTTCTCCACTGTGTATAAGCTCTGAGCCAATTCCGGCTTCTTCTTCATCGTCGTCCTCTTCCTCCTCCTCCTCCTCTTCATCATCAATGCATACAATTCTACATGCTGAGATTCCACCGAACATTGATCCAACAGTATGGCACGAGCTTCCCATTGAGGTCCAACGTGAGCTTATGATGAACTGGCAAAGCACAGTCGCGAATACTGGTACAACAGCTTCCATTCCAAAAACCAAATTAAACAGCACAAAAATGTCTAAAACGAACAAGAAAAGTAATAATAACAACAACAATACGTTGCATAAATACTTTATTCATAATTCCTACAGGAAAGAA
Protein: 658 (aa)
MEQDEVLNNAVEMSDSQTQHHPSVILHLDIDYFYAQVEEVLKPELKTRPFGVKQGLNIVTCNYLARDKGVGKWKPLKECLEKCPELVVVNGEDLSNYKVYSKRISDVLHVLGFGATERMGLDEHFIDITKEIEKELECDNTSEKRHFVGPIFPDERAFDECTCGCRQRLMIGTEIAFRIRKKLLDELKLTCSVGIAHNKLLAKLVGQMNKPNNQTVLAPTAAKVFMASLESLRTITGIGEKTAAKIEELGIKTIDHLQNCEISTLQKIFGSDMATRLKEMSLGIDKSEFKPSGKPKTVGLEDSFRPISIRSDAAEKFQALLSRLMIQIQDDGRIPQSIKVTVRKYDPVKKNSIRETKQCALTPSLFRCSDGKIQLTEGAEQKIIKNVLMLFDRMVDLKQQFNITLLGLCMSKFQEQKRGPGSIANYLMKKQDVEVQSITNLSNETNGSSFNDSFRSKTASPSSSLMDFETISNNSLDLSGSEESELEPSPKKRKKISLLLVARNRRYSSNDDIASPSKLNVSDLHLNSTFESTSESIRTTSTPNRVISPLCISSEPIPASSSSSSSSSSSSSSSSMHTILHAEIPPNIDPTVWHELPIEVQRELMMNWQSTVANTGTTASIPKTKLNSTKMSKTNKKSNNNNNNTLHKYFIHNSYRKE
| Type | Start | End | Length |
| CDS |
6387 |
8160 |
1774 |
| CDS |
8233 |
8432 |
200 |
| intron |
8161 |
8232 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657975 |
DNA polymerase iota [Aedes aegypti] gb|EAT41670.1| DNA polymerase iota [Aedes aegypti] |
1e-146 |
| InterPro |
IPR017961 |
DNA polymerase, Y-family, little finger domain |
|
| InterPro |
IPR001126 |
DNA-repair protein, UmuC-like |
|
| InterPro |
IPR017963 |
DNA-repair protein, UmuC-like, N-terminal |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(MF) |
GO:0003887 |
DNA-directed DNA polymerase activity |
|
| Gene Ontology(MF) |
GO:0003684 |
damaged DNA binding |
|
| Pfam |
PF11798.3 |
IMS family HHH motif |
0.003 |
| Pfam |
PF10391.4 |
Fingers domain of DNA polymerase lambda |
0.003 |
| Pfam |
PF11731.3 |
Pathogenicity locus |
0.002 |
| Pfam |
PF11799.3 |
impB/mucB/samB family C-terminal |
2.7e-07 |
| Pfam |
PF12826.2 |
Helix-hairpin-helix motif |
0.088 |
| Pfam |
PF00817.15 |
impB/mucB/samB family |
5.3e-36 |
| Pfam |
PF00633.18 |
Helix-hairpin-helix motif |
0.00031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000217800 |
| P. vanderplanki |
Pv.12730 |
| T. castaneum |
TC008961 |
| C. quinquefasciatus |
CPIJ018238 |
| S. invicta |
SI2.2.0_80489 |
| D. plexippus |
DPOGS214594PA |
| N. vitripennis |
NV16187-PA |
| H. sapiens |
ENSP00000385196 |
| H. sapiens |
ENSP00000462664 |
| B. mori |
BGIBMGA005125-TA |
| M. musculus |
ENSMUSG00000038425 |
| A. gambiae |
AGAP003157 |
| A. mellifera |
GB12093-PA |
| D. melanogaster |
FBgn0037554 |
| A. aegypti |
AAEL006715 |
| H. sapiens |
ENSP00000462681 |
| H. melpomene |
HMEL006970-PA |