MidgeBase gene description page [Pn.05725]
Outline
| Gene ID | Pn.05725 |
| Type | Protein coding gene |
| Scaffold | PnScaf5072 |
| Start | 5040 |
| End | 5613 |
| Direction | - |
Sequence
Transcript: 495 (bp)
ATGCAAAACATCAAATTACAATCTTCCGATAGTGAGATCTTTGAGTGCGATCTCGCCGTGGCAAAGTGCTCTGGAACCATAAGAACTATGCTAGAAGATTTGGGCATCGACGAAAGCAGTGAAGATGAAGTCGTTCCTCTACCAAACGTCAACTCGGCCATCTTACGAAAAGTGATTCAGTTCTGCACTTATCACAAAGATGATCCAGTTCCTTCAAGCACTGATGATGACGAAAATAAGGAGAAACGTACAGATGACATTACTTCATGGGATGCTGATTTCTTGAAAGTCGATCAAGGAACATTATTTGAGTTGATTTTGGCAGCAAATTACTTAGATATTCGCAGTTTGTTGGATGTCACATGCAAGACAGTCGCAAACATGATTAAGGGCAAGACTCCAGATGAAATCCGTAAGACGTTCAACATTAAGAACGATTTCTCTCCCGCTGAGGAGGAGCAAGTCCGCAAGGAAAATACATGGTGTGAGGAGAAG
Protein: 165 (aa)
MQNIKLQSSDSEIFECDLAVAKCSGTIRTMLEDLGIDESSEDEVVPLPNVNSAILRKVIQFCTYHKDDPVPSSTDDDENKEKRTDDITSWDADFLKVDQGTLFELILAANYLDIRSLLDVTCKTVANMIKGKTPDEIRKTFNIKNDFSPAEEEQVRKENTWCEEK
| Type | Start | End | Length |
| CDS |
5043 |
5249 |
207 |
| CDS |
5326 |
5613 |
288 |
| intron |
5250 |
5325 |
76 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653700 |
skp1 [Aedes aegypti] ref|XP_001653701.1| skp1 [Aedes aegypti] ref|XP_001851731.1| S-phase kinase-associated protein 1A [Culex quinquefasciatus] gb|EAT39006.1| skp1 [Aedes aegypti] gb|EAT39007.1| skp1 [Aedes aegypti] gb|EDS33767.1| S-phase kinase-associated protein 1A [Culex quinquefasciatus] |
9e-76 |
| InterPro |
IPR016897 |
E3 ubiquitin ligase, SCF complex, Skp subunit |
|
| InterPro |
IPR016072 |
SKP1 component, dimerisation |
|
| InterPro |
IPR001232 |
SKP1 component |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR016073 |
SKP1 component, POZ |
|
| Gene Ontology(BP) |
GO:0006511 |
ubiquitin-dependent protein catabolic process |
|
| Pfam |
PF01466.14 |
Skp1 family, dimerisation domain |
3.2e-39 |
| Pfam |
PF03931.10 |
Skp1 family, tetramerisation domain |
8.1e-25 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
0.00077 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000430885 |
| H. sapiens |
ENSP00000331708 |
| H. sapiens |
ENSP00000429415 |
| A. mellifera |
GB18508-PA |
| C. quinquefasciatus |
CPIJ009705 |
| A. aegypti |
AAEL009160 |
| H. sapiens |
ENSP00000431067 |
| B. mori |
BGIBMGA000918-TA |
| H. sapiens |
ENSP00000429472 |
| M. musculus |
ENSMUSG00000036309 |
| H. melpomene |
HMEL017731-PA |
| T. castaneum |
TC007681 |
| D. melanogaster |
FBgn0034863 |
| D. plexippus |
DPOGS211966PA |
| P. vanderplanki |
Pv.11131 |
| P. vanderplanki |
Pv.08160 |
| H. sapiens |
ENSP00000429961 |
| H. sapiens |
ENSP00000231487 |
| D. melanogaster |
FBgn0025637 |
| A. gambiae |
AGAP008719 |
| N. vitripennis |
NV18217-PA |
| P. humanus |
PHUM503280-PA |
| N. vitripennis |
NV50566-PA |
| H. sapiens |
ENSP00000429686 |