MidgeBase gene description page [Pn.05718]
Outline
| Gene ID | Pn.05718 |
| Type | Protein coding gene |
| Scaffold | PnScaf5061 |
| Start | 14358 |
| End | 18662 |
| Direction | - |
Sequence
Transcript: 1503 (bp)
ATGAACCAGCAAAATATTACGGAGGATTCCTCGGCATCCATAATGTCACATCAAATTACGAGCGACAACTTCTTCTCCCTCCTCTCCGCCATGAAGAACTTCAATGGGTCAATGAACAACAGCTCGACTCGCTTCTTCCGACCGCACATCAACGACTCGCGAACGACCATGAATTTCTACCAGTTCTGGCTGCACTCGTTCTATCCCTTCTACAGCAACTACACCGCCAACGACTCGATGCAGTATCTGACGTGCGCGTCCACTCAAAATCCCACCGGAAATGTGATAGCCATGATTCTCTACATAATTGTGTGCTGCGTCGGGCTGTTCGGTAACACCCTCGTCATCTACGTCGTGCTGAAGTTCTCGACCATGAAGACCGTCACCAACCGTTACATCCTCAACTTGGCCATCGCAGACGAGTGCTTCCTCATCGGCATTCCCTTCCTGCTCACCACCATGTATCTCAACGAGTGGATTTTCGGCTCGTTCCTCTGCAAGCTCTACATGGTCTCCACCTCCATCACGCAGTTCTCGTCCTCGATTTTTCTGCTAATTATGTCCGCCGACAGATTCATTGCCGTCTGCCATCCCATCTCATCGCCTCGCTTTCGAACGCAATTAGTCTCTAAAATTGTGTCACTATTGGCGTGGGGAATTTCCATTATCATCATGCTTCCCGTAATGCTATATGCAAACACGACGGAAAAGTTTCCGGGCTCCGACGAAATGACATGTAATATTTTATGGCAACACCCAAGCGTTGACGGTCAGCTGGGCGGCTCAACGTTCACATTATACTCGCTAATCTTGGGCTTTGCCGTTCCATTAAGCCTCATCCTCGTCTTCTATTATTTAGTCATTAAGAAGCTGCAGAATGTCGGCCCCAAGAACAAGTCCAAAGACAAGAAGCGTTCGCACCGCAAAGTCACTCGCCTCGTCCTCACCGTCATCACCGTGTATGTGCTGTGCTGGTGTCCTTACTGGGTCAGCCAAATGGCTCTTATAAACTCGCCGCCAGATGTTTGCCAAAGCAAATTGGAAATTACCGTCTTTGTTCTCGTCGGTGCTCTAGGTTACTCAAATTCCGCAATCAACCCCATCCTCTATGCCTTCCTCAGCGACAACTTCAAGAAGTCGTTCATGAAGGCGTGCATGTGTACGCGCGGTGGGAAGGACATCAACGGGCAATTGCAGTACGAGAATAGCTTGTTTCCACGTTTCGGTCGCAGCAACCGGAGTTCCGAGAAGCTATCGGCAATTGCGAAGAGCAATTTTCAGAAGAGCAAAACGACGATGATTGGCAAGGAGTCGGAGGCGATAACGGCGACGGCAGTGATTATGGAGCAAGACAAGAGCAAGAATTCGAGTGCCGTTAAAACGGCGGCGATAACCGTTTCCAATCACTGCGACGGCAAGAGCCACACGAGTAATGGAGTCAACATCGAGACATCGAGGAACGTTCAAGCGGTTCAACGCTCCGAAGTTCTGCACACGGACTTG
Protein: 501 (aa)
MNQQNITEDSSASIMSHQITSDNFFSLLSAMKNFNGSMNNSSTRFFRPHINDSRTTMNFYQFWLHSFYPFYSNYTANDSMQYLTCASTQNPTGNVIAMILYIIVCCVGLFGNTLVIYVVLKFSTMKTVTNRYILNLAIADECFLIGIPFLLTTMYLNEWIFGSFLCKLYMVSTSITQFSSSIFLLIMSADRFIAVCHPISSPRFRTQLVSKIVSLLAWGISIIIMLPVMLYANTTEKFPGSDEMTCNILWQHPSVDGQLGGSTFTLYSLILGFAVPLSLILVFYYLVIKKLQNVGPKNKSKDKKRSHRKVTRLVLTVITVYVLCWCPYWVSQMALINSPPDVCQSKLEITVFVLVGALGYSNSAINPILYAFLSDNFKKSFMKACMCTRGGKDINGQLQYENSLFPRFGRSNRSSEKLSAIAKSNFQKSKTTMIGKESEAITATAVIMEQDKSKNSSAVKTAAITVSNHCDGKSHTSNGVNIETSRNVQAVQRSEVLHTDL
| Type | Start | End | Length |
| CDS |
14361 |
14742 |
382 |
| CDS |
15440 |
15573 |
134 |
| CDS |
15752 |
16044 |
293 |
| CDS |
17969 |
18662 |
694 |
| intron |
14743 |
15439 |
697 |
| intron |
15574 |
15751 |
178 |
| intron |
16045 |
17968 |
1924 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001854846 |
somatostatin receptor type 5 [Culex quinquefasciatus] gb|EDS34469.1| somatostatin receptor type 5 [Culex quinquefasciatus] |
1e-141 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000586 |
Somatostatin receptor |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0004994 |
somatostatin receptor activity |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
7.6e-14 |
| Pfam |
PF10328.4 |
Serpentine type 7TM GPCR chemoreceptor Srx |
4.9e-05 |
| Pfam |
PF07962.7 |
Replication Fork Protection Component Swi3 |
0.029 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
5.9e-56 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000047904 |
| H. sapiens |
ENSP00000350198 |
| A. gambiae |
AGAP010486 |
| N. vitripennis |
NV15867-PA |
| P. humanus |
PHUM101310-PA |
| A. mellifera |
GB20155-PA |
| A. gambiae |
AGAP012268 |
| M. musculus |
ENSMUSG00000035431 |
| H. sapiens |
ENSP00000255008 |
| B. mori |
BGIBMGA006675-TA |
| S. invicta |
SI2.2.0_02583 |
| P. vanderplanki |
Pv.09553 |
| C. quinquefasciatus |
CPIJ011191 |
| T. castaneum |
TC012842 |
| A. aegypti |
AAEL012356 |
| H. melpomene |
HMEL010877-PA |
| M. musculus |
ENSMUSG00000037014 |
| H. sapiens |
ENSP00000326616 |
| C. quinquefasciatus |
CPIJ010469 |
| D. plexippus |
DPOGS213889PA |
| A. aegypti |
AAEL012920 |
| D. melanogaster |
FBgn0036789 |
| H. sapiens |
ENSP00000267377 |
| P. vanderplanki |
Pv.07563 |