MidgeBase gene description page [Pn.05648]
Outline
| Gene ID | Pn.05648 |
| Type | Protein coding gene |
| Scaffold | PnScaf4976 |
| Start | 2451 |
| End | 3451 |
| Direction | - |
Sequence
Transcript: 642 (bp)
ATGGCAGATCACGCACATCACGTACATCATCATCATATGCCAGAGACAACCTCAATGCCTGCAGTTTCGACCGAAATGGACCACAGCATGCACGATCATAGCATGCACATGCATTCCATGGACAACAACTCGTCTTCGTCGCCGCACAGCCACATGGAGCACATGATGTCAATGGCTTTCCATTTCGGTTGCGACGAGACAATTTTGTTTCCCCAATGGAAGATCAGTAGCTGCTTCGGACTCGTCTGTTCGATGCTTGTGATTTTCATTTTTGGCATACTGTACGAGGGACTGAAATACTATCGCGAGCACTTGTTCTGGAAGACATACAATGCGCTGCAGTACAGAGCTGTGAGTGCGCCGGACACCGTGAAAAATGGCCCGCCCGAAGCCAACGACTCTCGCGTCGTTCATATGGTCGGTGAAGTCGTTCATCGAAATCCACCAACAATTTTCTCAGCGATGCATCTCTACCAATCGTTTCTTCACCTCATTCAAGTGACTCTATCTCTCATGCTGATGCTCGTCTTCATGACCTACAACGTGTGGCTCTGTCTTGCCGTCGTTTTGGGCGCCATGGTCGGGTACTTTCTTTTCGGTTGGAAAAAATCCATTGTGGTCGACGTTACGGAGCACTGTCAC
Protein: 214 (aa)
MADHAHHVHHHHMPETTSMPAVSTEMDHSMHDHSMHMHSMDNNSSSSPHSHMEHMMSMAFHFGCDETILFPQWKISSCFGLVCSMLVIFIFGILYEGLKYYREHLFWKTYNALQYRAVSAPDTVKNGPPEANDSRVVHMVGEVVHRNPPTIFSAMHLYQSFLHLIQVTLSLMLMLVFMTYNVWLCLAVVLGAMVGYFLFGWKKSIVVDVTEHCH
| Type | Start | End | Length |
| CDS |
2454 |
2652 |
199 |
| CDS |
2860 |
2889 |
30 |
| CDS |
2969 |
3204 |
236 |
| CDS |
3275 |
3451 |
177 |
| intron |
2653 |
2859 |
207 |
| intron |
2890 |
2968 |
79 |
| intron |
3205 |
3274 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663457 |
high-affinity copper uptake protein [Aedes aegypti] gb|EAT34445.1| high-affinity copper uptake protein [Aedes aegypti] |
3e-62 |
| InterPro |
IPR007274 |
Ctr copper transporter |
|
| Gene Ontology(BP) |
GO:0035434 |
copper ion transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005375 |
copper ion transmembrane transporter activity |
|
| Pfam |
PF04145.10 |
Ctr copper transporter family |
3.2e-37 |
| Pfam |
PF12822.2 |
Protein of unknown function (DUF3816) |
0.0045 |
| Pfam |
PF13829.1 |
Domain of unknown function (DUF4191) |
0.11 |
| Pfam |
PF02517.11 |
CAAX protease self-immunity |
4.6 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000066152 |
| D. plexippus |
DPOGS204498PA |
| C. quinquefasciatus |
CPIJ018594 |
| S. invicta |
SI2.2.0_06670 |
| N. vitripennis |
NV11698-PA |
| D. melanogaster |
FBgn0062413 |
| D. plexippus |
DPOGS212844PA |
| P. humanus |
PHUM339810-PA |
| A. aegypti |
AAEL013309 |
| M. musculus |
ENSMUSG00000066150 |
| H. melpomene |
HMEL004480-PA |
| B. mori |
BGIBMGA000788-TA |
| H. sapiens |
ENSP00000259392 |
| A. mellifera |
GB19681-PA |
| H. sapiens |
ENSP00000363327 |
| C. quinquefasciatus |
CPIJ015736 |
| H. melpomene |
HMEL007822-PA |
| A. gambiae |
AGAP002109 |
| P. vanderplanki |
Pv.00436 |
| T. castaneum |
TC004460 |
| B. mori |
BGIBMGA007841-TA |
| H. sapiens |
ENSP00000363329 |