MidgeBase gene description page [Pn.05645]
Outline
| Gene ID | Pn.05645 |
| Type | Protein coding gene |
| Scaffold | PnScaf4972 |
| Start | 3493 |
| End | 12242 |
| Direction | - |
Sequence
Transcript: 2736 (bp)
ATGTACAAGAGACTGCACCATGGCGGCATTAAGTCAGCGACAACAGCCGCAGTAGCCATTAATAGAAAGTGTAATATTGATAATCGGAAATACGACGATAACACCATCACTGACATTGAGCCTGACATGATTGAAGACGACTCTGGAGTTGTTTTGAGACGTCACAATCGCAAATATCTTTATTCCGATTCAACAACAGTTAGCAATGACGCGATGTCTAGTGACGACGATAATGAGACACTTGACATTTTATATCCTTTACCGCGTGTGAACACACACGAGCGGTCACTTGTCGACGAAACAAAACGATGCGATAAGAACGATAAAAATCCGCTCGCAACTCAAGACCACATTAATGATAACCGTTTATTGCGCGGCGATTCCAGTTCGTACTTGTTCAAATCGCTCTTTAAAACGAAATTGAAACGTCAGAAACTTCACGATGGCAAATATCCTTATCTCATCCCACCGAATCCAGCTGTGCGAGCGTTGATTGTATTCAACAAAGATGATCAATGCAGTGATGCTCTATTGAAAGCATGCGAACGCCTAAATATAGAATCGACACGCTCGAAAAGCACAGATCTAGCGCTAGAACTCTTTCAAAGTCCCGTCAATGGCGGACATCATCTTGTGATAGTTGATGGACGATGTAAAAATGTCGATATCGAGTCCTTCGGGAGATCCATGAGAAATTCGAAGGGAAGTCAATACACGATAATGGTGTGTGTGGTTAAAAAGAGTGTTTTTGAGAAGGACGATACGACAATTTTGTCGCTGTTAGATGTAGGATATAATAGATGTTTAATTGAATCTCCACATGTATCAATGCTAAGCTCCGAGCTTCGACAAATTCAGCACTCACTCATTAGACCGCAGAATGTTATCGCCACACAGCAAGCCCTTTATGCTGCCCTTCATCGATCGAAGGATACAGTTTTGATCACAGACGATGCTTTAAGAATACAGTACATGAATAAGCAAACTGAACGAATTTTGGGCATGAAAATTGATGAAATCGTTGGACGTCCACTGCATGATCTTATCAATTCTGATGTTTCGCTTTTATTGAGTCAGACTAATAGACTTAGGGAATTCGATGGCACACTATCGTTCAACAGAAAGACGCAGGAGCCCATCGTGTTTCATGTCCGTGCATGCCCGATATCGTGCATTGGCAAGACCACAACTCATTTAATTTTAAGTTTAAGTGGCATACAGGGTAGTAATCATGAGGTAGGTGGCGGTGCACTTCCATCGATCCCACAAGCCAAAGAGCCGCGCGGTTCATTGCACTCGATAAGACGCGGCAGCTTCGACATTCGCTCCATAGCATCGGATGGTCTGCGACGGACGAGTCTGGCAAAGTTGAGTTCTCTTCCGTTGGAGGCGCCAATCACCAAGGTTCTCACGCTACTGACGCAGGTTCAGGAAAACTGCTCGGCAGACGAGGCTCGTCTTCTCGATCGTGTCATGGACTTTTTGAAGCGCGAAGGACTCTACAGTCCTCAAATCAAAGAGATTCGACCCGAGGATCCCGTCGCAACTGATCTCATTGGGGCGCTCTTGACACAGGGTCCAACGAATGTCGTATCGTCACGTCGCAGTTCGAACGAATCAATAATTCGCTCGGGTAGCCGACAATCGAGCACAAGTACTTCGGTAGCAAAAATGAAGATACCTTCGCATGTCTCCGAACTGTTGGATTGTGCACTCGATTGGGACTTTGAGATATTCCGTCTCGAGGAATTGACTGATAAGCATCCGCTCGTGTATTTGGGCTCGGAATTGTTTAGACGCTTCGACGTATACAACACGTTTAATTGCGACGAGATGACTTTCAGATCGTGGCTCATTGTAATAGAATCACATTATCATAATGCAAACACTTATCACAATTCAACACACGCAGCTGATGTCATGCAGGCAACTGCATGCTATCTTCAGCAATTGGCAAATAGAGATTTAAAAATCATGGACAGACTGGATGAGGCAACAGCCTTAATTGCGTCCGCTGCGCACGATATCGATCATCCAGGTCGCTCATCTGCGTTCCTTTGCAATTCGGATAACTCGTTGGCTCTCCTTTATAACGACCTTTGCGTGCTTGAATCACATCATGCGGCAACGACTTTCCGTTTAACTCACTCCGACGAGAAGATTAACATATTTAAGAATTTGGATCGAGATATGTACAAATTGGCACGTTCAATTATCATCGATATGATTCTAGCGACGGAGATGACGAGGCATTTTGAGCATTTAGCCAAATTCGTTAGCGTTTTTGGCAACGATGCAGAATCCAAAGATTTACCAAATGACGAGGATAACCAAATGCTGATACGTCGAATGCTCATCAAGTGCTCTGATGTCAGCAACCCCACGCGTCCACTGAAATTTTGCGTTGAATGGGCCAGAAGGATTGCGGAAGAATATTTTATTCAAACGGACGAGGAGAAACGGAAAGGCATGCCAATTGTAATGCCGATGTTTGATAGGGCGACATGCTCCATATCCAAGAGTCAAATCGGTTTTATAGAATTCATAATTCAAGACATGATGAATGCGTGGGATGCATTTATCGACATGCCAGAGCTCGTTCAGTACATGCAGTACAATTATACTCAATGGAAATTGTTTGAGGAGCAGGGCATTAACACATTAAACGATATTAAGCGAAAGCAAATGTCCATTACAAATGCGAGTCTTTCGAACATGAAGCTGGACGAAATGATG
Protein: 912 (aa)
MYKRLHHGGIKSATTAAVAINRKCNIDNRKYDDNTITDIEPDMIEDDSGVVLRRHNRKYLYSDSTTVSNDAMSSDDDNETLDILYPLPRVNTHERSLVDETKRCDKNDKNPLATQDHINDNRLLRGDSSSYLFKSLFKTKLKRQKLHDGKYPYLIPPNPAVRALIVFNKDDQCSDALLKACERLNIESTRSKSTDLALELFQSPVNGGHHLVIVDGRCKNVDIESFGRSMRNSKGSQYTIMVCVVKKSVFEKDDTTILSLLDVGYNRCLIESPHVSMLSSELRQIQHSLIRPQNVIATQQALYAALHRSKDTVLITDDALRIQYMNKQTERILGMKIDEIVGRPLHDLINSDVSLLLSQTNRLREFDGTLSFNRKTQEPIVFHVRACPISCIGKTTTHLILSLSGIQGSNHEVGGGALPSIPQAKEPRGSLHSIRRGSFDIRSIASDGLRRTSLAKLSSLPLEAPITKVLTLLTQVQENCSADEARLLDRVMDFLKREGLYSPQIKEIRPEDPVATDLIGALLTQGPTNVVSSRRSSNESIIRSGSRQSSTSTSVAKMKIPSHVSELLDCALDWDFEIFRLEELTDKHPLVYLGSELFRRFDVYNTFNCDEMTFRSWLIVIESHYHNANTYHNSTHAADVMQATACYLQQLANRDLKIMDRLDEATALIASAAHDIDHPGRSSAFLCNSDNSLALLYNDLCVLESHHAATTFRLTHSDEKINIFKNLDRDMYKLARSIIIDMILATEMTRHFEHLAKFVSVFGNDAESKDLPNDEDNQMLIRRMLIKCSDVSNPTRPLKFCVEWARRIAEEYFIQTDEEKRKGMPIVMPMFDRATCSISKSQIGFIEFIIQDMMNAWDAFIDMPELVQYMQYNYTQWKLFEEQGINTLNDIKRKQMSITNASLSNMKLDEMM
| Type | Start | End | Length |
| CDS |
3496 |
3733 |
238 |
| CDS |
3808 |
3885 |
78 |
| CDS |
4048 |
4157 |
110 |
| CDS |
4238 |
4621 |
384 |
| CDS |
4733 |
5086 |
354 |
| CDS |
5166 |
5726 |
561 |
| CDS |
5875 |
6084 |
210 |
| CDS |
6197 |
6254 |
58 |
| CDS |
7052 |
7111 |
60 |
| CDS |
7199 |
7449 |
251 |
| CDS |
8841 |
8950 |
110 |
| CDS |
9094 |
9395 |
302 |
| CDS |
12223 |
12242 |
20 |
| intron |
3734 |
3807 |
74 |
| intron |
3886 |
4047 |
162 |
| intron |
4158 |
4237 |
80 |
| intron |
4622 |
4732 |
111 |
| intron |
5087 |
5165 |
79 |
| intron |
5727 |
5874 |
148 |
| intron |
6085 |
6196 |
112 |
| intron |
6255 |
7051 |
797 |
| intron |
7112 |
7198 |
87 |
| intron |
7450 |
8840 |
1391 |
| intron |
8951 |
9093 |
143 |
| intron |
9396 |
12222 |
2827 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688029 |
AGAP007163-PB [Anopheles gambiae str. PEST] gb|EDO64678.1| AGAP007163-PB [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR002073 |
3'5'-cyclic nucleotide phosphodiesterase, catalytic domain |
|
| InterPro |
IPR023088 |
3'5'-cyclic nucleotide phosphodiesterase |
|
| InterPro |
IPR000014 |
PAS domain |
|
| InterPro |
IPR003607 |
HD/PDEase domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(MF) |
GO:0008081 |
phosphoric diester hydrolase activity |
|
| Gene Ontology(MF) |
GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0004871 |
signal transducer activity |
|
| Pfam |
PF13426.1 |
PAS domain |
3.4e-11 |
| Pfam |
PF08448.5 |
PAS fold |
6.5e-05 |
| Pfam |
PF00989.19 |
PAS fold |
7.2e-11 |
| Pfam |
PF13188.1 |
PAS domain |
0.00034 |
| Pfam |
PF00233.14 |
3'5'-cyclic nucleotide phosphodiesterase |
2e-56 |
| Pfam |
PF08446.6 |
PAS fold |
0.019 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA004107-TA |
| N. vitripennis |
NV13277-PA |
| M. musculus |
ENSMUSG00000025584 |
| C. quinquefasciatus |
CPIJ005635 |
| H. sapiens |
ENSP00000264917 |
| A. mellifera |
GB17724-PA |
| M. musculus |
ENSMUSG00000021684 |
| D. plexippus |
DPOGS214302PA |
| H. sapiens |
ENSP00000453808 |
| A. gambiae |
AGAP007163 |
| H. sapiens |
ENSP00000378056 |
| H. melpomene |
HMEL005458-PA |
| P. vanderplanki |
Pv.04145 |
| H. sapiens |
ENSP00000311453 |
| H. sapiens |
ENSP00000340679 |
| H. sapiens |
ENSP00000345446 |
| H. sapiens |
ENSP00000423461 |
| P. vanderplanki |
Pv.04144 |
| C. quinquefasciatus |
CPIJ010718 |
| T. castaneum |
TC008723 |
| A. aegypti |
AAEL013342 |
| H. sapiens |
ENSP00000330428 |
| H. sapiens |
ENSP00000345646 |
| S. invicta |
SI2.2.0_07491 |
| N. vitripennis |
NV13993-PA |
| P. humanus |
PHUM405220-PA |
| H. sapiens |
ENSP00000331336 |
| D. melanogaster |
FBgn0034886 |