MidgeBase gene description page [Pn.05613]
Outline
| Gene ID | Pn.05613 |
| Type | Protein coding gene |
| Scaffold | PnScaf4921 |
| Start | 83251 |
| End | 84198 |
| Direction | - |
Sequence
Transcript: 702 (bp)
ATGGCACTCATTGGATTTGGTGATGCTAGAGAGTCAGAAGATTTTCAATGTGGCGGGTCATTGATTTCCGAGCAGTGGATTCTTTCGGCAGCACATTGTGTTAGCAGTGGAGGAAAGCCCGCAAATGTGGCAAAGGTCGGTAACGTTATTCGCAATCGAGTCACGCACAATTCGTGGACATACAAAATCGTTGATAGAATTCCACATCCAAAATACAATTCAAGATTCGCAGACGACGATATAGCTCTTTTTAAATTAGAGAAGTCTGTACTTCTCAACGTTGATGTCATACCGATTTGCCTTCCCGATCGAGAACTTTTAACAACAAAAGCCGCCATAGCAACTGGTTTCGGACAAACTGATTTCTCGGAAGACGTAAGTGATACGTTACTGAAGGTTATTATTGAATATTTCAAGCCCAGCGACTGTAACCAAGCGTTTGAGGACAGCACCAAGTTTGCGAACAGGGAAATAAATTGGGACAAGATGGTTTGCGCGGGATCAAACAACAAATCCGGTGACACCTGCAATGGAGACTCTGGAGGTCCATTGCAAATATACCATTCTGAAGTATATTGCATGTACAAAATAATTGGAGTTACATCTTTCGGGCATGCTTATTGCGGATTTCCTGGAATACCAGCGATCTACACAAAAGTCTTCCACTATCTGGATTGGATAGAGGCAATTGTGTGGCCAAAT
Protein: 234 (aa)
MALIGFGDARESEDFQCGGSLISEQWILSAAHCVSSGGKPANVAKVGNVIRNRVTHNSWTYKIVDRIPHPKYNSRFADDDIALFKLEKSVLLNVDVIPICLPDRELLTTKAAIATGFGQTDFSEDVSDTLLKVIIEYFKPSDCNQAFEDSTKFANREINWDKMVCAGSNNKSGDTCNGDSGGPLQIYHSEVYCMYKIIGVTSFGHAYCGFPGIPAIYTKVFHYLDWIEAIVWPN
| Type | Start | End | Length |
| CDS |
83254 |
83411 |
158 |
| CDS |
83468 |
83480 |
13 |
| CDS |
83551 |
83994 |
444 |
| CDS |
84056 |
84102 |
47 |
| CDS |
84159 |
84198 |
40 |
| intron |
83412 |
83467 |
56 |
| intron |
83481 |
83550 |
70 |
| intron |
83995 |
84055 |
61 |
| intron |
84103 |
84158 |
56 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_552698 |
AGAP008835-PA [Anopheles gambiae str. PEST] gb|EAL38946.3| AGAP008835-PA [Anopheles gambiae str. PEST] |
3e-50 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13365.1 |
Trypsin-like peptidase domain |
0.0023 |
| Pfam |
PF02395.11 |
Immunoglobulin A1 protease |
0.005 |
| Pfam |
PF00089.21 |
Trypsin |
4.7e-45 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL007800-PA |
| B. mori |
BGIBMGA012426-TA |
| S. invicta |
SI2.2.0_14825 |
| T. castaneum |
TC005230 |
| D. plexippus |
DPOGS215103PA |
| H. melpomene |
HMEL014227-PA |
| B. mori |
BGIBMGA009610-TA |
| B. mori |
BGIBMGA012425-TA |
| T. castaneum |
TC013416 |
| D. melanogaster |
FBgn0039630 |
| D. plexippus |
DPOGS215105PA |
| T. castaneum |
TC013415 |
| A. mellifera |
GB18732-PA |
| D. plexippus |
DPOGS215119PA |
| A. mellifera |
GB17927-PA |
| P. vanderplanki |
Pv.10548 |
| P. humanus |
PHUM452840-PA |
| P. vanderplanki |
Pv.00151 |
| T. castaneum |
TC004863 |
| C. quinquefasciatus |
CPIJ000870 |
| A. gambiae |
AGAP008835 |
| N. vitripennis |
NV10938-PA |
| D. melanogaster |
FBgn0039629 |
| C. quinquefasciatus |
CPIJ020281 |
| D. melanogaster |
FBgn0039628 |
| A. aegypti |
AAEL011991 |
| T. castaneum |
TC005130 |