MidgeBase gene description page [Pn.05602]
Outline
| Gene ID | Pn.05602 |
| Type | Protein coding gene |
| Scaffold | PnScaf4919 |
| Start | 1252 |
| End | 2529 |
| Direction | + |
Sequence
Transcript: 933 (bp)
ATGATTTCTGAAACAAAAAATCGAAAAAACTTGCAGACGCGCTTCAACAAGTCGTTCGCGATGGAGTTCCGCGAGGAGCGCTGCCGCAAGGCGTTCAAGGAGAACTTGGAAGCCATCACGAGCCACAACAAGGCGTTCGAGGAGGGCAAGGTCTCGTACAAGCTCGCGGTCAACAATCTCGCTGACCTCTCGCGAATCCACTATCTGCGCAACTACGTGCGGCTCGTGTACAGCGCAATTGACGAGAACGACGACCGCGACTACGTGTTGGGCAGCTCGCTGTTCGAGAACAAGCAGTACCCGGACTCGTTCGATTGGCGCGAGAAGGGCTTCAAGACGCGGCCGCGCAACCAGAAGTCGTGCGGCTCGTGCTACGCCTTCAGCATCGCGGGCTCCGTCGAGGGCCAGATCTTCAAGAAGATCAACAAAATCATCGAGATGAGCGTGCAGCAGATGGTCGACTGCAGCGTGAGCTTCGGCAACCACGGATGTGCCGGCGGTTCGCTGCGGACCACGCTGAGGTACTTGGAGAAGAGCGGCGGACTGATGCGCGAGGTCGACTATCCCTACACCTCCTCGCACAACAAGTGCACCTTCGACGACGACCTCGCTGTGGTGAACATCACGTCGTGGGCAATTTTGCCATCGAAGAACGAGGAGGCGATGAAGGGAGTTCTCAACGAGGTCGGGCCGATTGCAGTCTCGATCGATGCCTCGCCAAAAACCTTCCAGCTGTACAGCGAGGGCGTGTATGACGACCCCAACTGCTCCTCCACCAACGTCAATCATGCCATGCTGCTGATCGGCTACACGCCGGATTACTGGATTCTGAAGAACTGGTGGGGAAAGTCGTGGGGTCAGGAAGGCTTCATGTACGTCAAGAGAGGTGTAAACAGGTGTGGAATCTCAAATTATTCCGCCTATGCCGTTGTT
Protein: 311 (aa)
MISETKNRKNLQTRFNKSFAMEFREERCRKAFKENLEAITSHNKAFEEGKVSYKLAVNNLADLSRIHYLRNYVRLVYSAIDENDDRDYVLGSSLFENKQYPDSFDWREKGFKTRPRNQKSCGSCYAFSIAGSVEGQIFKKINKIIEMSVQQMVDCSVSFGNHGCAGGSLRTTLRYLEKSGGLMREVDYPYTSSHNKCTFDDDLAVVNITSWAILPSKNEEAMKGVLNEVGPIAVSIDASPKTFQLYSEGVYDDPNCSSTNVNHAMLLIGYTPDYWILKNWWGKSWGQEGFMYVKRGVNRCGISNYSAYAVV
| Type | Start | End | Length |
| CDS |
1252 |
1830 |
579 |
| CDS |
2013 |
2250 |
238 |
| CDS |
2411 |
2526 |
116 |
| intron |
1831 |
2012 |
182 |
| intron |
2251 |
2410 |
160 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002011438 |
GI14103 [Drosophila mojavensis] gb|EDW10928.1| GI14103 [Drosophila mojavensis] |
1e-101 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.043 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
2.3e-07 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
1.1e-63 |
| Pfam |
PF13529.1 |
Peptidase_C39 like family |
0.021 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_08365 |
| D. plexippus |
DPOGS213646PA |
| A. mellifera |
GB15910-PA |
| B. mori |
BGIBMGA004622-TA |
| P. vanderplanki |
Pv.12168 |
| N. vitripennis |
NV13938-PA |
| D. melanogaster |
FBgn0032228 |
| T. castaneum |
TC013582 |
| P. humanus |
PHUM020210-PA |
| H. melpomene |
HMEL004595-PA |