MidgeBase gene description page [Pn.05558]
Outline
| Gene ID | Pn.05558 |
| Type | Protein coding gene |
| Scaffold | PnScaf4888 |
| Start | 43112 |
| End | 43844 |
| Direction | - |
Sequence
Transcript: 420 (bp)
ATGTCTAAGAGAGGTCGTGGTGGATCAGCCGGAGGAAAATTCCGAATTTCACTTGGTATGCCTGTTGGAGCAGTTATAAACTGCGCCGATAACACAGGTGGCAAGAACTTGTACGTCATTGCAGTTCATGGTATTCGCGGTCGCTTGAATCGCTTACCTTCAGCCGGTGTCGGTGATATGTTTGTCGCTACTGTCAAGAAGGGTAAGCCCGAGCTCCGAAAAAAAGTAATGCCTGCCGTCGTCATCCGGCAGCGAAAACCGTTCCGCAGACGTGACGGAATATTCATTTACTTCGAGGACAATGCGGGCGTAATCGTAAACAACAAGGGTGAAATGAAAGGATCAGCCATAACTGGCCCAGTAGCCAAAGAATGCGCAGATCTGTGGCCGCGTATTGCTTCAAATGCAGGCTCAATAGCC
Protein: 140 (aa)
MSKRGRGGSAGGKFRISLGMPVGAVINCADNTGGKNLYVIAVHGIRGRLNRLPSAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGIFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA
| Type | Start | End | Length |
| CDS |
43115 |
43437 |
323 |
| CDS |
43503 |
43586 |
84 |
| CDS |
43832 |
43844 |
13 |
| intron |
43438 |
43502 |
65 |
| intron |
43587 |
43831 |
245 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650232 |
60S ribosomal protein L23 [Aedes aegypti] ref|XP_001663308.1| 60S ribosomal protein L23 [Aedes aegypti] ref|XP_001663765.1| 60S ribosomal protein L23 [Aedes aegypti] ref|XP_319443.3| AGAP010252-PA [Anopheles gambiae str. PEST] ref|XP_001861351.1| RL23 [Culex quinquefasciatus] sp|Q9GNE2.1|RL23_AEDAE RecName: Full=60S ribosomal protein L23; AltName: Full=AeRpL17A; AltName: Full=L17A gb|AAG33863.1|AF315596_1 ribosomal protein L17A [Aedes aegypti] gb|AAG33864.1|AF315597_1 ribosomal protein L17A [Aedes aegypti] gb|AAK94453.1|AF399675_1 ribosomal protein L17A [Aedes aegypti] gb|AAL85622.1| ribosomal protein L17A [Aedes aegypti] gb|EAT32767.1| 60S ribosomal protein L23 [Aedes aegypti] gb|EAT34144.1| 60S ribosomal protein L23 [Aedes aegypti] gb|EAT34697.1| 60S ribosomal protein L23 [Aedes aegypti] gb|ABM68599.1| RL23 [Aedes aegypti] gb|EAA13962.4| AGAP010252-PA [Anopheles gambiae str. PEST] gb|EDS35529.1| RL23 [Culex quinquefasciatus] gb|ACI30146.1| 60S ribosomal protein L14/L17/L23 [Anopheles darlingi] |
3e-72 |
| InterPro |
IPR023571 |
Ribosomal protein L14 domain |
|
| InterPro |
IPR000218 |
Ribosomal protein L14b/L23e |
|
| InterPro |
IPR019972 |
Ribosomal protein L14 conserved site |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF00238.14 |
Ribosomal protein L14p/L23e |
3.2e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000377865 |
| B. mori |
BGIBMGA009751-TA |
| P. humanus |
PHUM465850-PA |
| M. musculus |
ENSMUSG00000071415 |
| T. castaneum |
TC009485 |
| A. aegypti |
AAEL013583 |
| A. aegypti |
AAEL015006 |
| D. plexippus |
DPOGS204004PA |
| D. melanogaster |
FBgn0010078 |
| H. melpomene |
HMEL011246-PA |
| P. vanderplanki |
Pv.06149 |
| H. sapiens |
ENSP00000462773 |
| C. quinquefasciatus |
CPIJ011325 |
| A. aegypti |
AAEL013097 |
| A. gambiae |
AGAP010252 |
| H. sapiens |
ENSP00000420311 |
| N. vitripennis |
NV12412-PA |
| A. mellifera |
GB12633-PA |