MidgeBase gene description page [Pn.05539]
Outline
| Gene ID | Pn.05539 |
| Type | Protein coding gene |
| Scaffold | PnScaf4883 |
| Start | 77840 |
| End | 79225 |
| Direction | + |
Sequence
Transcript: 1116 (bp)
ATGCAGTCAGTAACCGTAATAGCTCCAGTTAATATCGCAGTTATCAAGTACTGGGGAAAGAGAAATGAGCAATTAATATTGCCAATTAACGATTCGCTCTCCGTTACTTTATCAACTGCTGACCTATGCAGCAAGACGACAATAACCGCGGATGCGAGTTTCGCGGAGAACAAAATTGTGTTGAATGGAAAGGAAGAAAATTTTGAGAATGAGCGAATCACACGGTGCTTCGAGATGATTAAGCAGCGCGCGGCGGAGGCCGAAACCTGTTCCAAAGAGATGCTTTCGTATAAAATTCATGTCGATTCGGAGAACAACTTCCCGACTGCAGCTGGTCTCGCTAGCAGTGCGAGCGGCTATGCATGCTTGGTTTATGGTCTCGCTCAACTCTACGGCCTAAAGAAGCAAGAGATTTCCGACATTGCACGCATGGGATCAGGCAGTGCGTGCCGCAGCATTTATGGTGGATTCGTCCAGTGGCAAAAGGGCGTTCAGCTGGATGGAAAGGACTCGATCGCCGTCCAAATCGCGCCGGCCTCTCACTGGCCCGATCTTCACGTTCTTATTCTCGTCGTCAACGACAGCAAGAAGAAGGTCGCCTCGACGTCGGGCATGGCGCGCAGCGTCCTCACGTCCGAACTTATAAAGTATCGCGTCGAGAAGTGCGTGCCGCAGCGAATTCACACGATCACACAGGCGATCAAGGATCGCGACTTCTCGAAGTTCGCTGAGATCACGATGAAGGATTCGAACCAGTTCCACGCAATCTGCCTCGACACTTACCCACCGTGCGTGTACATGAACGACGTCTCGCACGCCATCGTGAATTTCGTGCATGAGTTCAACAGAAACGAGGGAGAAACGAGAGTCGCGTACACCTTCGACGCCGGCCCCAATGCGTGCCTCTACTTGCCCGAAAAATACGTGAAGCGCGTCCTTGCATTCGTCAATCACGTTCTGCCGAATGATAATCAAAGTTCAGTGGAGTACTTGCGCGGAACGCCCGTCGACATTGACTCGGAGGAAATGGACTTTAGCCAATACACTCCGTACGAGAAAAATGCGCTGAAGTACATCATTCACACGAAGGTCGGCGACGGACCGTCGGTTGTCGAA
Protein: 372 (aa)
MQSVTVIAPVNIAVIKYWGKRNEQLILPINDSLSVTLSTADLCSKTTITADASFAENKIVLNGKEENFENERITRCFEMIKQRAAEAETCSKEMLSYKIHVDSENNFPTAAGLASSASGYACLVYGLAQLYGLKKQEISDIARMGSGSACRSIYGGFVQWQKGVQLDGKDSIAVQIAPASHWPDLHVLILVVNDSKKKVASTSGMARSVLTSELIKYRVEKCVPQRIHTITQAIKDRDFSKFAEITMKDSNQFHAICLDTYPPCVYMNDVSHAIVNFVHEFNRNEGETRVAYTFDAGPNACLYLPEKYVKRVLAFVNHVLPNDNQSSVEYLRGTPVDIDSEEMDFSQYTPYEKNALKYIIHTKVGDGPSVVE
| Type | Start | End | Length |
| CDS |
77840 |
77891 |
52 |
| CDS |
77963 |
78033 |
71 |
| CDS |
78139 |
79038 |
900 |
| CDS |
79130 |
79222 |
93 |
| intron |
77892 |
77962 |
71 |
| intron |
78034 |
78138 |
105 |
| intron |
79039 |
79129 |
91 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001648384 |
diphosphomevalonate decarboxylase [Aedes aegypti] gb|EAT44593.1| diphosphomevalonate decarboxylase [Aedes aegypti] |
1e-138 |
| InterPro |
IPR005935 |
Diphosphomevalonate decarboxylase |
|
| InterPro |
IPR020568 |
Ribosomal protein S5 domain 2-type fold |
|
| InterPro |
IPR006204 |
GHMP kinase N-terminal domain |
|
| InterPro |
IPR014721 |
Ribosomal protein S5 domain 2-type fold, subgroup |
|
| Gene Ontology(BP) |
GO:0008299 |
isoprenoid biosynthetic process |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004163 |
diphosphomevalonate decarboxylase activity |
|
| Pfam |
PF00288.21 |
GHMP kinases N terminal domain |
3.4e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.03540 |
| A. gambiae |
AGAP001611 |
| T. castaneum |
TC003224 |
| C. quinquefasciatus |
CPIJ003140 |
| D. plexippus |
DPOGS204656PA |
| D. plexippus |
DPOGS204657PA |
| D. melanogaster |
FBgn0030683 |
| B. mori |
BGIBMGA007459-TA |
| N. vitripennis |
NV12107-PA |
| S. invicta |
SI2.2.0_01729 |
| M. musculus |
ENSMUSG00000006517 |
| A. aegypti |
AAEL004050 |
| H. melpomene |
HMEL004012-PA |
| P. humanus |
PHUM582500-PA |
| A. mellifera |
GB16296-PA |
| H. sapiens |
ENSP00000301012 |