MidgeBase gene description page [Pn.05527]
Outline
| Gene ID | Pn.05527 |
| Type | Protein coding gene |
| Scaffold | PnScaf4883 |
| Start | 24817 |
| End | 25783 |
| Direction | - |
Sequence
Transcript: 831 (bp)
ATGAATAGCGTATTAGCTCCAGAAACCGAACATGCAGGATTCAACTTCTCAAACTGCCGCAGAAACGAGAAGCTCGTTCAAGATGGATTCAAGCCGCCGAAGGCAACGAAAACTGGAACAACCATTGTTGGAATCATCTACAAGGATGGCGTAATTTTGGGTGCTGATACCAGAGCCACTAGTGGAAACATTGTCAGCGACAAAAATTGTGAAAAAATTCACTACATGGCCAAGAACATTTACTGTTGCGGTGCTGGAACTGCGGCCGATACTGAGATGACTACTAAAATGATTTCGAGTCAACTTGAGCTCCACCGATTGAGCACAAACAGAGTTGTTCCAGTGCCTTGCGCATCAACATTGCTCAAGCAGTATCTCTTTCGTTATCAAGGACATGTTAGCGCCGCTCTTGTCCTGGGCGGTGTTGACAATCAGGGTCCTCACATCTACTGCATATATCCACACGGATCGACAGATCGACTTCCTTACGCCACTATGGGTTCGGGTTCGCTTGCTGCAATGTCTGTCTTTGAGTCTCGCTGGAAGCCAGACATGGAGGAGGAAGAAGGAAAGAAGCTTGTGCGCGACGCAATCGCAGCTGGTATCTTCAACGATCTCGGCTCCGGCTCGAATGTTGACTTGTGTATTATCCGTAAAAATTCGACTGAATATTTGCGAAACTATGAGCTCTCAAACCAGAAGGGTGTCAGAAACCTGGACTACACATATAAGCGAGGAGCGACCGGCGTTCTGTCTGTTAAGAAAATTGCTTTTGACGTTGTCGAGCAGTCTACATCGTCAAGTGGAGGTGTTGAGCAAATGGATACTAAT
Protein: 277 (aa)
MNSVLAPETEHAGFNFSNCRRNEKLVQDGFKPPKATKTGTTIVGIIYKDGVILGADTRATSGNIVSDKNCEKIHYMAKNIYCCGAGTAADTEMTTKMISSQLELHRLSTNRVVPVPCASTLLKQYLFRYQGHVSAALVLGGVDNQGPHIYCIYPHGSTDRLPYATMGSGSLAAMSVFESRWKPDMEEEEGKKLVRDAIAAGIFNDLGSGSNVDLCIIRKNSTEYLRNYELSNQKGVRNLDYTYKRGATGVLSVKKIAFDVVEQSTSSSGGVEQMDTN
| Type | Start | End | Length |
| CDS |
24820 |
25408 |
589 |
| CDS |
25465 |
25644 |
180 |
| CDS |
25722 |
25783 |
62 |
| intron |
25409 |
25464 |
56 |
| intron |
25645 |
25721 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002009254 |
GI11352 [Drosophila mojavensis] gb|EDW19730.1| GI11352 [Drosophila mojavensis] |
1e-117 |
| InterPro |
IPR024689 |
Proteasome beta subunit, C-terminal |
|
| InterPro |
IPR016050 |
Proteasome, beta-type subunit, conserved site |
|
| InterPro |
IPR000243 |
Peptidase T1A, proteasome beta-subunit |
|
| InterPro |
IPR001353 |
Proteasome, subunit alpha/beta |
|
| InterPro |
IPR023333 |
Proteasome B-type subunit |
|
| Gene Ontology(BP) |
GO:0051603 |
proteolysis involved in cellular protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005839 |
proteasome core complex |
|
| Gene Ontology(MF) |
GO:0004175 |
endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0004298 |
threonine-type endopeptidase activity |
|
| Pfam |
PF00227.21 |
Proteasome subunit |
4.9e-52 |
| Pfam |
PF12465.3 |
Proteasome beta subunits C terminal |
1.6e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0023174 |
| P. vanderplanki |
Pv.03551 |
| H. sapiens |
ENSP00000259457 |
| S. invicta |
SI2.2.0_07161 |
| C. quinquefasciatus |
CPIJ008264 |
| M. musculus |
ENSMUSG00000026750 |
| A. aegypti |
AAEL003431 |
| D. plexippus |
DPOGS211134PA |
| N. vitripennis |
NV11430-PA |
| A. gambiae |
AGAP011423 |
| B. mori |
BGIBMGA003009-TA |
| T. castaneum |
TC010442 |
| H. melpomene |
HMEL017220-PA |
| P. humanus |
PHUM249100-PA |
| A. mellifera |
GB19553-PA |