MidgeBase gene description page [Pn.05478]
Outline
| Gene ID | Pn.05478 |
| Type | Protein coding gene |
| Scaffold | PnScaf4831 |
| Start | 7911 |
| End | 12851 |
| Direction | + |
Sequence
Transcript: 2646 (bp)
ATGTCGCAGGACACGCAGAGCTACGCCGACGACGGCTACAAGCAGGTGCCCTCGCACGGCCTCAAGCTCAAGTTCGACCACAAGTTCAGCGAGAAGCAGAATTTCTCGCAGAACCTGAAGCCGTCGTGGCGGCAGCTGTGGCATCTGATGCCCATGATCTGGCGCTACGTGCCCTACTACTGGCGCAACAGCAAGTCCGGCGCGCCTGTCCTCATGGACTACTTCGCCATGCAGCACCACGGCGGCATCTACGGCTGCCCGCTCGGCGGCATCGGGGCCGGCACAATCGGCCGTGGATTTGCCGGCGAGTTCTGCCGCTATCAGCTGCGCCCGGGACTCTACGAGTACAATGTCGTGCACGCCAATCAGTTTATCGTCAACATCCGCGACGAGAACGATAAGACCATCTTTCAGAGCCTCCTCTCCACTTACAGCCGACCAAAGAGCGTCCTCCCGGCATGGGAAAACAAACTGACCGCTTCGAAGTGCACGTACACGGCGCTCTATCCGCGCGCCTGGTCCGAGTTCGATCTCAGCGAGTACGGCGTGAAGTTGACGTGCCGGCAAGTGTCTCCGATCATTCCGCACAATTACAAGGACTCCTCGCTGCCGTGCGCCGTCTTCGTGTGGCAAGTCGAGAACGTCTGCGACAGCGAGCGTCGCGTTTCGATAACTTTCACGTGGAAAAACGGCACCGGCAACCGCAAGCAGGATGCGGCCGGTGGAGCCAAGACACAAACCTTCGAAAGCGAAGACACACGAGGTGCGAGCATTCTGCAGACCGTCGCCGACATGCCGTGCCACTATCGCGTCGGTGTCTTCAAGACTTCGGGCGATAAGTCTGCGAAATTCGCGACTGTCGGCAAAATCGACGCGAACGGCAATGGCGCCGGTTTGTGGAACGACTTGATCCAAAATGGCGTCCCAACCGAGCGCAGCGAGGACACAAACCTCAAAGAGGGCAAGGACGTTTGCGTGGCCGTTTGCGGGCAAAAAACCATCGCTCCACGAGCCGTCGACGAGCTGGAGTTTGCGCTCGTGTGGGACATGCCGCGCGTAAAGTTCCCGAAGGGCGAAAAGCAATTCACGAAGTTCTACACGAAGTACTTCGGCAGCGATCTGCAGGCGGGCGAGAGAATCATGGACTACGCCTTTAAGAACTACGGCAAGTGGGAGCAGCTCGTTGTCGACGAGTGGCAGCGGCCGATTCTCGAGGACGAGAGCCTTCCCGACTGGTACAAGGCCGCCATTTTTAATGAGCTGTACTTTATTGCTGACGGCGGGAGTTTGTGGTCGGTGATTGACGAGGACGAGAATCTGCCTGCCAGTGATCCAAGGCATGCATACGGTCGCTATGGTTACCTCGAGGGTCATGAGTACCGCATGTACAACACATATGACGTTCACTTTTACGCGAGTCATGCTCTCATTAGCTTGTGGCCCAACCTGCAGGTCAGCATCCAGTACGACTTCAAGGACACAATAACGCGGGAGATCGCGGAGGTTAGGAAGCATCTGTATGACGGCAAGTCGTGCCCGCGAAAAATCAAAAACACAGTCCCGCACGATCTGGGCGATCCGGCCGAGGATCCATGGAATCTGATCAACTCGTATCCGATCCACGATGTGAGCGAGTGGCGCGATCTCAACGCAAAGTTCATTCTGCAAGTCTACCGCGACTACTTCGTGCTCAACGAGTTTGCGCAGCTAAGCGCCGACAATGCCAGCAAATTCAGCTCCATCGAGTTCATCGACAAGGAGAGTCTCTCCGAGATGTTCATACTCGACAACAGGAACCGCCTCGGCGATGACAAGAGCAAGAAATCGGCATCGATGTACATAAACGAGACGAACGGGAAGGTGTACCTGATGGACGCAATGCAGTACCTTAAGGACATGTACCAAGTGTGCAAAATCGTCATGGACAAGACAATCGAGTTCGACACCGACAACGATGGACTCATTGAGAACTCCAACAGTCCCGATCAGACATACGACACTTGGGTCATGTCGGGGCCGAGCATCTACTGCGGCGGGTTGTTTGTGGCAAGTCTGCAGGTGATGTCCTTGATGGCGAGTTTGATGAACGAGCCGAACGACTCGCTTCGGTACCGCGACCTCCTCGACAAGGGCAAGAAGTCGATCGAGGAGAAGCTGTGGAACGGCTCGTACTACAACTTCGACACGAGCGGCACGAAGAACATCATGTCGGACCAGATGTGCGCGCACTGGTACCTCCGCTGCAGCGGCCTCGACTACGAGCTCTTTCCCAAGGAAAATGTGCGCAAGTCGCTGCAGACGATTTTCGACAACAACGTGATGCGCTTCTGCGAGGGCAAGATGGGCGCCGTCAACGGCTTCTCGCCCGAAATCGGCGGCGCCGACACGTCGTGCATGCAGGCCGAGGAGATCTGGACGGGCGTGGTGTTCGGGCTGGCGAGCTGCATGATCTACGAGGACATGCAAGAGGAGGCGATGGTGACGGTGGCGGGGCTGTACAGGGCGATGACCGAGAAAATCGGACTCGCTTTTGAAACGCCCGAGGCGATGTACGGCAGCAGAAACTACCGCTCCATCGGCTACATGCGGCCGCTCAGCATCTACGCCATGCAGACGGCCCACGAGCGCAGAAAGAAAATGCGCAAC
Protein: 882 (aa)
MSQDTQSYADDGYKQVPSHGLKLKFDHKFSEKQNFSQNLKPSWRQLWHLMPMIWRYVPYYWRNSKSGAPVLMDYFAMQHHGGIYGCPLGGIGAGTIGRGFAGEFCRYQLRPGLYEYNVVHANQFIVNIRDENDKTIFQSLLSTYSRPKSVLPAWENKLTASKCTYTALYPRAWSEFDLSEYGVKLTCRQVSPIIPHNYKDSSLPCAVFVWQVENVCDSERRVSITFTWKNGTGNRKQDAAGGAKTQTFESEDTRGASILQTVADMPCHYRVGVFKTSGDKSAKFATVGKIDANGNGAGLWNDLIQNGVPTERSEDTNLKEGKDVCVAVCGQKTIAPRAVDELEFALVWDMPRVKFPKGEKQFTKFYTKYFGSDLQAGERIMDYAFKNYGKWEQLVVDEWQRPILEDESLPDWYKAAIFNELYFIADGGSLWSVIDEDENLPASDPRHAYGRYGYLEGHEYRMYNTYDVHFYASHALISLWPNLQVSIQYDFKDTITREIAEVRKHLYDGKSCPRKIKNTVPHDLGDPAEDPWNLINSYPIHDVSEWRDLNAKFILQVYRDYFVLNEFAQLSADNASKFSSIEFIDKESLSEMFILDNRNRLGDDKSKKSASMYINETNGKVYLMDAMQYLKDMYQVCKIVMDKTIEFDTDNDGLIENSNSPDQTYDTWVMSGPSIYCGGLFVASLQVMSLMASLMNEPNDSLRYRDLLDKGKKSIEEKLWNGSYYNFDTSGTKNIMSDQMCAHWYLRCSGLDYELFPKENVRKSLQTIFDNNVMRFCEGKMGAVNGFSPEIGGADTSCMQAEEIWTGVVFGLASCMIYEDMQEEAMVTVAGLYRAMTEKIGLAFETPEAMYGSRNYRSIGYMRPLSIYAMQTAHERRKKMRN
| Type | Start | End | Length |
| CDS |
7911 |
8190 |
280 |
| CDS |
8281 |
8434 |
154 |
| CDS |
9534 |
10319 |
786 |
| CDS |
10389 |
10505 |
117 |
| CDS |
10800 |
10914 |
115 |
| CDS |
10977 |
11340 |
364 |
| CDS |
11450 |
11654 |
205 |
| CDS |
12224 |
12848 |
625 |
| intron |
8191 |
8280 |
90 |
| intron |
8435 |
9533 |
1099 |
| intron |
10320 |
10388 |
69 |
| intron |
10506 |
10799 |
294 |
| intron |
10915 |
10976 |
62 |
| intron |
11341 |
11449 |
109 |
| intron |
11655 |
12223 |
569 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_319575 |
AGAP008830-PA [Anopheles gambiae str. PEST] gb|EAA14848.4| AGAP008830-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR024462 |
Beta-glucosidase, GBA2 type, N-terminal |
|
| InterPro |
IPR006775 |
Glucosylceramidase |
|
| InterPro |
IPR008928 |
Six-hairpin glycosidase-like |
|
| Gene Ontology(BP) |
GO:0006665 |
sphingolipid metabolic process |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0004348 |
glucosylceramidase activity |
|
| Pfam |
PF12215.3 |
beta-Glucocerebrosidase 2 N terminal |
3.5e-65 |
| Pfam |
PF04685.8 |
Protein of unknown function, DUF608 |
9.8e-146 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000028467 |
| H. melpomene |
HMEL012865-PA |
| B. mori |
BGIBMGA010386-TA |
| B. mori |
BGIBMGA010385-TA |
| P. vanderplanki |
Pv.16475 |
| H. sapiens |
ENSP00000367334 |
| D. plexippus |
DPOGS214052PA |
| C. quinquefasciatus |
CPIJ802262 |
| T. castaneum |
TC016367 |
| N. vitripennis |
NV16363-PA |
| H. sapiens |
ENSP00000367343 |
| D. plexippus |
DPOGS214053PA |
| D. melanogaster |
FBgn0028916 |
| A. aegypti |
AAEL001478 |
| A. gambiae |
AGAP008830 |
| P. humanus |
PHUM370980-PA |
| H. sapiens |
ENSP00000442372 |
| P. vanderplanki |
Pv.13758 |