MidgeBase gene description page [Pn.05433]
Outline
| Gene ID | Pn.05433 |
| Type | Protein coding gene |
| Scaffold | PnScaf4743 |
| Start | 13523 |
| End | 13991 |
| Direction | - |
Sequence
Transcript: 408 (bp)
ATGGGAAAAATTATGAAAGCAGGAAAGGTTGTCATCGTCCTCGGTGGTCGATATGCAGGACGAAAAGCAGTGATTCTAAAGGCAATCGATGATGGCACAAATGAAAAACCATTTGCACAAGCATTGGTCGCTGGTATTTCACGCTATCCACGCCGTGTTGTTCGCCGAATGAAGAAAGATAAAATCAAGAAGAACATCCGCATCAAACCATTTATCAAGTGCATCAATTACAATCATTTGATGCCCACACGTTACAGTGTTTCTGACATAACATTGGATCAAAAATATGGCCTGAAGGATCTTCGAGATCCAGTTAAACGCAAGAAGGCTGCATTCCAAGTTCGCATGAAACTCGAAGATCGCTACAAGCAAGGCAAGAACAAGTGGTTCTTTCAAAAATTACGCTTC
Protein: 136 (aa)
MGKIMKAGKVVIVLGGRYAGRKAVILKAIDDGTNEKPFAQALVAGISRYPRRVVRRMKKDKIKKNIRIKPFIKCINYNHLMPTRYSVSDITLDQKYGLKDLRDPVKRKKAAFQVRMKLEDRYKQGKNKWFFQKLRF
| Type | Start | End | Length |
| CDS |
13526 |
13906 |
381 |
| CDS |
13965 |
13991 |
27 |
| intron |
13907 |
13964 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACF72873 |
60S ribosomal protein L27e [Ochlerotatus taeniorhynchus] |
7e-54 |
| InterPro |
IPR018262 |
Ribosomal protein L27e, conserved site |
|
| InterPro |
IPR014722 |
Translation protein SH3-like, subgroup |
|
| InterPro |
IPR005824 |
KOW |
|
| InterPro |
IPR001141 |
Ribosomal protein L27e |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01777.13 |
Ribosomal L27e protein family |
4.7e-32 |
| Pfam |
PF00467.24 |
KOW motif |
1.6e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.02400 |