MidgeBase gene description page [Pn.05414]
Outline
| Gene ID | Pn.05414 |
| Type | Protein coding gene |
| Scaffold | PnScaf4719 |
| Start | 47398 |
| End | 49244 |
| Direction | - |
Sequence
Transcript: 1722 (bp)
ATGGCAGAGGATTTGAACATCAATTTGGTAGAGGTAAAACGAGATCTAATAAAAGGCATAGTAGAATGCAATAAGCGCGGATTAATTCATTCAAGCAAATGGCTCGCAGAACTGAATCAAGGACTGCCCATTTCAGATTTTGAATACTCGTCCATCGGTCCGACGTCTACAGATTCCGGAATTTCGCCCGAGGAATATGACAGTTACATTCTCGCAAAAACCTACTTCGACTGTCGCGAGTACGACAGAGCAGCATATTTCACTCAAAATTGCATATCGCCTGTGCCGAGGTTCATATACTTATACTCAATGTATATGGCGAGAGAAAAGAAGCGTTTGGACAACTCACCCGACAACACCACGCTCACGGGCAATGCACATCTGAGGGATCTTAGCGAACTCATGCAGGTCCTGAACGAGCAGTACAATCAAAAGAAACTCGACGGATACGGCATGTATCTTTACGCCGTGACTCTCAAGAAGTTAGATCTCACACAACTAGCAATCACAGTGTTTCTCGAGTGCGTGCATCTCGTGCCAACGCTTTGGAGCGCCTGGATAGAACTGTCTCCGCTCATTCAAGATACGGAGCAGCTGAGAGCGCTCAACTTGCCAAAGCATTGGATAAAGAACTTCTTCGTTGCTCACACCTTCATTGAAATTTTCGTTAACGAAGCCGGCATAAGTTTGCTCGAGGATCTACAGCAAAATGGATTCGAAAAATGCATCTACATAACATCCCAAATCGCCATCGCCTACCACAACAAGCGAGATGTCGACAAAGCTATCGAGATGTTCCAGCAAGTGCTCGCAGTCGACCCTTACCGGCTGGAGAATCTGGACATGTACTCGAATCTCCTCTTTGTGCGGGAGCAGAAAACCGAAATGGCTCATCTCGCGCACAAGGCCGTTGAAATCAACAAATACCGTCCTGAGACGTGCTGTGTAATTGGAAATTATTACAGCATTCGAGGCGAGCATCAAAAGTCCATTCTTTACTTTCAACGAGCACTCAAACTCAACCCGAAATACCTGTCAGCCTGGACTTTAATGGGCCACGAGTTTATGGAGCTGAAGAACACAAACGCCGCCATTCAAAGCTACAGGCAGGCGATCGAGATAAACAGACGAGATTTCAGAGCTTGGTACGGACTAGGTCAGGCCTACGAAATCATCAAAATGCCGTTTTATGGACTCTATTACTACAGAACCGCCACGCAACTGAGACCGTACGACAGCAGGATGTTGATTGCTTTGGGTGAAACTTACGAGAAGCTCGACAAAAAGTCAAATGCGATCAAGTGCTATCAGAAGGCCTGCAACGTTGGCGACATCGAGGGATTCGCTACGCTGAAGCTCGGAAAACTTTACGAGGACATGAAGGACCACGATAATGCGGCGAACGCCTACAAAAATTACGTAAATGACGAGAGATCGATCAACGAGAAGAACTCGATGATTCACGTTCTTCTGTTTTTGGCTGGATATTGCAAGGACAAGAACAATTTGGAAGACGCGACTTATTATGCGTACAAAGTGCTCGAAATTGACGAGACGAAAACGGAGGCAAAAGCAATTCTCAAGTCAATTGCAAGCGCCAGAGCTGCGAAGTCAGAGGGTGGAGCAGAACTCGGTGAGGTCGTTATGGATCTGGAGCAGTCTGACGCCGCGCAACCAGAGCAGCAGGAAACGAGCGGCGAAGACATGGACATGTCCATGGCA
Protein: 574 (aa)
MAEDLNINLVEVKRDLIKGIVECNKRGLIHSSKWLAELNQGLPISDFEYSSIGPTSTDSGISPEEYDSYILAKTYFDCREYDRAAYFTQNCISPVPRFIYLYSMYMAREKKRLDNSPDNTTLTGNAHLRDLSELMQVLNEQYNQKKLDGYGMYLYAVTLKKLDLTQLAITVFLECVHLVPTLWSAWIELSPLIQDTEQLRALNLPKHWIKNFFVAHTFIEIFVNEAGISLLEDLQQNGFEKCIYITSQIAIAYHNKRDVDKAIEMFQQVLAVDPYRLENLDMYSNLLFVREQKTEMAHLAHKAVEINKYRPETCCVIGNYYSIRGEHQKSILYFQRALKLNPKYLSAWTLMGHEFMELKNTNAAIQSYRQAIEINRRDFRAWYGLGQAYEIIKMPFYGLYYYRTATQLRPYDSRMLIALGETYEKLDKKSNAIKCYQKACNVGDIEGFATLKLGKLYEDMKDHDNAANAYKNYVNDERSINEKNSMIHVLLFLAGYCKDKNNLEDATYYAYKVLEIDETKTEAKAILKSIASARAAKSEGGAELGEVVMDLEQSDAAQPEQQETSGEDMDMSMA
| Type | Start | End | Length |
| CDS |
47401 |
48003 |
603 |
| CDS |
48060 |
49084 |
1025 |
| CDS |
49151 |
49244 |
94 |
| intron |
48004 |
48059 |
56 |
| intron |
49085 |
49150 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656619 |
cell division cycle [Aedes aegypti] gb|EAT45473.1| cell division cycle [Aedes aegypti] |
0.0 |
| InterPro |
IPR001440 |
Tetratricopeptide TPR-1 |
|
| InterPro |
IPR011990 |
Tetratricopeptide-like helical |
|
| InterPro |
IPR007192 |
Cdc23 |
|
| InterPro |
IPR013026 |
Tetratricopeptide repeat-containing domain |
|
| InterPro |
IPR019734 |
Tetratricopeptide repeat |
|
| Gene Ontology(BP) |
GO:0030071 |
regulation of mitotic metaphase/anaphase transition |
|
| Gene Ontology(CC) |
GO:0005680 |
anaphase-promoting complex |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF07719.12 |
Tetratricopeptide repeat |
6.2e-25 |
| Pfam |
PF13174.1 |
Tetratricopeptide repeat |
4.7e-10 |
| Pfam |
PF13176.1 |
Tetratricopeptide repeat |
1.7e-17 |
| Pfam |
PF04049.8 |
Anaphase promoting complex subunit 8 / Cdc23 |
9e-34 |
| Pfam |
PF13374.1 |
Tetratricopeptide repeat |
1.3e-05 |
| Pfam |
PF13431.1 |
Tetratricopeptide repeat |
3.9e-10 |
| Pfam |
PF13181.1 |
Tetratricopeptide repeat |
6.8e-22 |
| Pfam |
PF12895.2 |
Anaphase-promoting complex, cyclosome, subunit 3 |
0.00089 |
| Pfam |
PF13428.1 |
Tetratricopeptide repeat |
1.9e-18 |
| Pfam |
PF10602.4 |
26S proteasome subunit RPN7 |
0.00033 |
| Pfam |
PF13424.1 |
Tetratricopeptide repeat |
1.9e-13 |
| Pfam |
PF13429.1 |
Tetratricopeptide repeat |
0.00058 |
| Pfam |
PF13432.1 |
Tetratricopeptide repeat |
5.8e-13 |
| Pfam |
PF00515.23 |
Tetratricopeptide repeat |
8.4e-28 |
| Pfam |
PF13414.1 |
TPR repeat |
3.7e-22 |
| Pfam |
PF04212.13 |
MIT (microtubule interacting and transport) domain |
0.0017 |
| Pfam |
PF05560.6 |
Bacillus thuringiensis P21 molecular chaperone protein |
0.019 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000378350 |
| T. castaneum |
TC014483 |
| D. melanogaster |
FBgn0051687 |
| N. vitripennis |
NV10887-PA |
| M. musculus |
ENSMUSG00000024370 |
| D. melanogaster |
FBgn0032863 |
| A. aegypti |
AAEL003273 |
| D. plexippus |
DPOGS201340PA |
| P. vanderplanki |
Pv.05710 |
| H. melpomene |
HMEL012394-PA |
| B. mori |
BGIBMGA003124-TA |
| C. quinquefasciatus |
CPIJ010980 |
| S. invicta |
SI2.2.0_10330 |
| P. humanus |
PHUM246470-PA |
| A. gambiae |
AGAP009880 |
| A. mellifera |
GB19210-PA |