MidgeBase gene description page [Pn.05388]
Outline
| Gene ID | Pn.05388 |
| Type | Protein coding gene |
| Scaffold | PnScaf4687 |
| Start | 19317 |
| End | 22061 |
| Direction | + |
Sequence
Transcript: 2676 (bp)
ATGTCTTTTATGGACAAGATATCGTTCTCTAATCTTACCCATGCATTAGACAAGTGCGCTACCGCTACAAGTGTCGCAAAACGCGAAAAATATCTGGAAAGATTCTTCGAGGTAGTTTTTAAACTGCAGCAAAGATACAGAACAGAACGTCCGGATGGAAATCCCACCTTGTATCCTCTTTTGAGGATGATATTGGCGTCAGAGGAGCATGAAAGGAGTTACGGTATTCAAGAAAAAAAATTACGAAGCCTACTTGTCAAAAGCCTCGGAATGCACGGAGAAGATAAAAAGAAAATTGAGCAGTGCAATGAGAACGATATTGCAGATGAAGTTTACGAAGCCATCAAAACTCGGCATAACAAAGAGTCAAAGCTTTCAATTGCAGAAGTCGATCAAGCACTTAACGAACTCGCCGACAATCAAAAGACCGATGCACAGAAGTATCAGCTAGACAAACTCATTCTTAATGGTTCAGCTGGCTGCCTTAAGTGGATTGTCAAAGTTATTCTCAAAAGCAAAATCATCAGGTTATCGACCTCAAAGGTGCTCGATAAGTACCATCCGTGTGGAGGCAAGTTGTTCACTAAATACAATCACTTGTCAGAGGTTGTGAAACTCATCGAGACTGGAAAGGCTGAAGAAGGCCTTCGAGATGTCGTTAAGCCCTTCACTCCTGTGCGAGCGATGTTGTCGCAAAAATTTACCAGAGAAATGAGCGGTAATTTTGAGAAACACGAATTTTATCAGGAAGTAAAAATGGATGGTGAAAGGTTTCAGCTCCACATGGAAAACCAGACTTTTAAATATTTCTCAAGAAATGCTCATGAGTTTAGTGATAATTTCAATGTCTTGTTGTCGCCCTTAATCAAGTTCAAATCGGTAACACACAGCGTCATTTTGGACGGCGAAATGCTGATATGGAACAAAATATCTAACCGCTTTGTTACCAAAGGCGAAACTGACATGGATGTGAAGAGACTGAAGAGCCTTAGTTACCATCTCCGACCATGCTACTGTGCCTTCGACATTCTCTACCTGAATGGCACGAGTTTCATCAACGAACCGTATTACCGACGATTTGAAATATTGAAGACTCTTTTTGACGACCAAGTTGGAGTTCTCGTCAAAACAAAGCCCATAAAAATTCAGGGAGTCGAGCATTTGGTGACGCTTTTCAATGACGCAATGAAGAAGGAGGAAGAAGGACTGATTCTCAAGAGAGCTGACTCGCATTATATGCCTGGCGAGAGAGAAAAGGGAGGTTGGTTCAAAATGAAGGCTGACTACTTCGACAGCAACGTCGTAAAGGATTTCGATTGCGTGATATTGGGCGGAACGTTTCAGAATCCGCATACACGTGACATCATCCAGAAATACCACCTCGGCGCAATTGAGAAGCAGAGTGACGGAAATTTCAATGTTTTTGCGATTGGTGAGGTAGCGCAAGGAGTTTCGAACAACGAAAGAGTGACTCTTCATGAAAAGTTAATGAAATCAGCACAGACTTGCCGAAGCAGTGATGGAAGTGAAATCGAGTTTGAAAGGGGGAAAATTTTTCTCGGTTTAAGTCGACCGAACGTCATTATTCCGCCACACAAGTCGGTTGTGGTGCAGATTCGAGCTTCTGAGCTGATGCCCTCCAAGGAACAGTACACGAAATACACGTTCCGATTTCCGAGAATCGAGGCGATAAGGAATGACAAATTTTGGGATGAGTCATGCACACTGCAGGAGTTTCAGAGCATGTACACGAATGATCGCGGGCAACATGACCGACGAGTGGTGAAAATGAATCAACGAGTCGTGGATAAAAATGACATTTACTCGCCAGAGAAGAAAAAGGCGCGGATAATGCAGGGAAGGTCTCGGGCACGAGCCATCGAAGATTTCTCTAGAAATTCGCAAGAAGATATTGAACCCATCGACAGCGTTTTGGGAGGCTTAGAGTTTTGCGTAAAGAGCTCGTCGAAGAGTTTGCCTTCGGTTCATGAACTGAAAGCACTGCTGCAATTACATGGAGCGTCGTTAACAGAATTTCCACGCAAGAAGAAAACGTTTGCAGTAATTGCCGGTGACATTGAGCAACAAGTGAAGATATACATTCGAGAAAAGTCTCACAGTGTCATTAAGGCAGATTGGATTGTAAAAAGTCTCACAAAAGACACTCCATTAGATGACAGACCGAAACTTAGGCCATTAGATTTTCATTTCATGACGGATGAAATGTACGAGACTAACTTCAAAAGCGAGTTCGACAGATTCGGTGACTCATACCATGAACCCTTGCAGAGCGTCGAGGAATTGATGGAAATTGTGAAAAATATGAAGACTGAGCAGAAGATAACAACCGAAGAGGTGATTGCGCTCGAAAAGGAAATTTGCGAGTTCGCCGACAGTGAAAATTTTAACTTTTTTCGAGGAAAGTCTGCGACATTTATTCATGACGGAGACGCCAACATGATGATGGATTGGAGTAAAATAGTATTTCAATTCCGAGCTGGCGAAGTTTGCACTGAAATTCGACCAAGCACCTTGATTTTCGTCGATAGGGAAACGTTCAAGGCGGAAAATCACCCCGAAGTGTTGGGTCGAAAGATAATCGACTACAACTTTATTTTGGATTCAAATGAATCCGATAAGATGATTGGCATCGAAAAATATTTGCTTTCTGTAAAG
Protein: 892 (aa)
MSFMDKISFSNLTHALDKCATATSVAKREKYLERFFEVVFKLQQRYRTERPDGNPTLYPLLRMILASEEHERSYGIQEKKLRSLLVKSLGMHGEDKKKIEQCNENDIADEVYEAIKTRHNKESKLSIAEVDQALNELADNQKTDAQKYQLDKLILNGSAGCLKWIVKVILKSKIIRLSTSKVLDKYHPCGGKLFTKYNHLSEVVKLIETGKAEEGLRDVVKPFTPVRAMLSQKFTREMSGNFEKHEFYQEVKMDGERFQLHMENQTFKYFSRNAHEFSDNFNVLLSPLIKFKSVTHSVILDGEMLIWNKISNRFVTKGETDMDVKRLKSLSYHLRPCYCAFDILYLNGTSFINEPYYRRFEILKTLFDDQVGVLVKTKPIKIQGVEHLVTLFNDAMKKEEEGLILKRADSHYMPGEREKGGWFKMKADYFDSNVVKDFDCVILGGTFQNPHTRDIIQKYHLGAIEKQSDGNFNVFAIGEVAQGVSNNERVTLHEKLMKSAQTCRSSDGSEIEFERGKIFLGLSRPNVIIPPHKSVVVQIRASELMPSKEQYTKYTFRFPRIEAIRNDKFWDESCTLQEFQSMYTNDRGQHDRRVVKMNQRVVDKNDIYSPEKKKARIMQGRSRARAIEDFSRNSQEDIEPIDSVLGGLEFCVKSSSKSLPSVHELKALLQLHGASLTEFPRKKKTFAVIAGDIEQQVKIYIREKSHSVIKADWIVKSLTKDTPLDDRPKLRPLDFHFMTDEMYETNFKSEFDRFGDSYHEPLQSVEELMEIVKNMKTEQKITTEEVIALEKEICEFADSENFNFFRGKSATFIHDGDANMMMDWSKIVFQFRAGEVCTEIRPSTLIFVDRETFKAENHPEVLGRKIIDYNFILDSNESDKMIGIEKYLLSVK
| Type | Start | End | Length |
| CDS |
19317 |
19411 |
95 |
| CDS |
19478 |
22058 |
2581 |
| intron |
19412 |
19477 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001846941 |
DNA ligase 4 [Culex quinquefasciatus] gb|EDS45137.1| DNA ligase 4 [Culex quinquefasciatus] |
1e-119 |
| InterPro |
IPR016027 |
Nucleic acid-binding, OB-fold-like |
|
| InterPro |
IPR012340 |
Nucleic acid-binding, OB-fold |
|
| InterPro |
IPR012308 |
DNA ligase, ATP-dependent, N-terminal |
|
| InterPro |
IPR012310 |
DNA ligase, ATP-dependent, central |
|
| InterPro |
IPR012309 |
DNA ligase, ATP-dependent, C-terminal |
|
| InterPro |
IPR000977 |
DNA ligase, ATP-dependent |
|
| InterPro |
IPR001357 |
BRCT domain |
|
| Gene Ontology(BP) |
GO:0006281 |
DNA repair |
|
| Gene Ontology(BP) |
GO:0006260 |
DNA replication |
|
| Gene Ontology(BP) |
GO:0006310 |
DNA recombination |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0003910 |
DNA ligase (ATP) activity |
|
| Pfam |
PF04675.9 |
DNA ligase N terminus |
1.2e-21 |
| Pfam |
PF11411.3 |
DNA ligase IV |
0.033 |
| Pfam |
PF01068.16 |
ATP dependent DNA ligase domain |
1.9e-38 |
| Pfam |
PF01331.14 |
mRNA capping enzyme, catalytic domain |
5.5e-09 |
| Pfam |
PF04679.10 |
ATP dependent DNA ligase C terminal region |
3.9e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_09645 |
| A. aegypti |
AAEL017561 |
| C. quinquefasciatus |
CPIJ005161 |
| T. castaneum |
TC012220 |
| H. sapiens |
ENSP00000349393 |
| M. musculus |
ENSMUSG00000049717 |
| P. humanus |
PHUM592850-PA |
| H. sapiens |
ENSP00000385955 |
| H. melpomene |
HMEL014128-PA |
| C. quinquefasciatus |
CPIJ019290 |
| T. castaneum |
TC012219 |
| A. gambiae |
AGAP000623 |
| A. aegypti |
AAEL017365 |
| H. sapiens |
ENSP00000402030 |
| P. vanderplanki |
Pv.15195 |
| N. vitripennis |
NV17236-PA |
| D. plexippus |
DPOGS215661PA |
| A. mellifera |
GB10302-PA |
| S. invicta |
SI2.2.0_14481 |
| D. melanogaster |
FBgn0030506 |
| S. invicta |
SI2.2.0_11648 |
| B. mori |
BGIBMGA003557-TA |
| P. vanderplanki |
Pv.12498 |