MidgeBase gene description page [Pn.05322]
Outline
| Gene ID | Pn.05322 |
| Type | Protein coding gene |
| Scaffold | PnScaf4611 |
| Start | 11089 |
| End | 15992 |
| Direction | - |
Sequence
Transcript: 1608 (bp)
ATGAAAGCAAAAGCGATGTATCGAGTTCTCGCGATTTGCGGCCTCTTGCTGGCATCGACGCACGCCTACGGCAACAACCGAGCGCACCTGCGAAGCATCATCCCTCAGCCGCTGACAGTCGACCCGTGCTACGACGAGGACCGGCCCGTCCGCTGCATGCCCGACTTCGTGAACGCCGCCTTCGGTCGCAACATCGAGGCGTCGTCGACGTGCGGCGCCGGCGGCCCCGAGAAGTACTGCGACGCCGATGGCAAGTGCCACATCTGCGACGCGGGCGACGCGGCGCGCAACTTCAGCGCCGCCGCCCTCTCGGACATCCACAACATGCAGAACCTGACGTGCTGGCGCTCGGAGCCGCGGCCGCTGTCCAACACCAACTTCGGGTACGACAACACGCCCGACAACGTCACGCTGACGCTGTCGTTCGGCAAGAAGTTCGAGCTGACGTACGTGAGCCTGCTCTTCTGCCCCGGCGCCATCAAGCCCGACTCCATGGCCATCTACAAGAGCGCCGACTACGGCAAGACGTGGCTGCCCTTCCAGTTCTACAGCTCCCAGTGCAAGAAGCTCTACGGACGCACCTCGAAGCTGCAGATCACCAAGCGCAACGAGCAGGAGCCGCGCTGCCTCGACCACAACCGCTTCGCCACCGACGGCATGAGCGGCATCCAGGGCTCGCGCATCGCGTTCAGCACGCTCGAGGGCCGCCCGTCCGCCAACGAGTTCGACACGTCGGCCATCCTGCAGGACTGGGTGACGGCCACTGACATCCGCGTCATCTTCCACCGCCTGCAGAGCCCGCTCGCCGTGCAAACGATGAAGGCGCGACTGAAGAGCGAGTTTCTGGCGTCGTCGACGCTCTCACCGTCATCGCTGCTCGCCGCCGGCACCGGCACATATGCGCTCTCCGACTTCTCCGTCGGCGGCCGCTGCAAGTGCAACGGACACGCATCGCGGTGCGTGCGAAACGGCGAGGGACTGCTGGAGTGCGAGTGCAAGCACAACACCGCCGGACGCGACTGCGAGAAGTGCAAGCCCTTCTACTTCGATCGGCCGTGGGCGCGAGCCACCGTTCAGAATGCCAACGAGTGCAAAGCCTTAAAAAAGAGCATAACGAGTAAAGGCAGCGACCTCAAGAAAAAGAAGAAGCAAAAGGTGAACGAGGAGAGAAGTGACGAGATTTTCAAGAAGAACATCGAAGTTGTGCTTTCTCTCGTGAAAACTGTCCCGTTCAAGAATAGCAGCGCTGTGCGCAAATGGATTCTGAAACTGTTCGACCCACACTTGGAACGATCCGTGCGAAATGCTTATTTGGCGTGGCTGATGTACCAAATGCAGAACATGATTATTTTTGAGCCATTTGACGCGATTCCGCCGAAGGAACTCGAGAATCCACGGAAGTTCATGAATCCATCGAAATGGAAATCTTTGATGAAAGAGAGCAGCAAGGACCTGCAAAATCGCTTCCTTTTGAAGGTTTCGCCTCAAGTGCTGGCCAGTTTGCAGTATGAAAACCCTGCTCCAGCCAACTTTCTGTCAGATCAACCAGAGCCGGCGAGCAGTGGTTTCGTAGTTTACGGAGGATGTTTTAGCAATCATTTCACGAAA
Protein: 536 (aa)
MKAKAMYRVLAICGLLLASTHAYGNNRAHLRSIIPQPLTVDPCYDEDRPVRCMPDFVNAAFGRNIEASSTCGAGGPEKYCDADGKCHICDAGDAARNFSAAALSDIHNMQNLTCWRSEPRPLSNTNFGYDNTPDNVTLTLSFGKKFELTYVSLLFCPGAIKPDSMAIYKSADYGKTWLPFQFYSSQCKKLYGRTSKLQITKRNEQEPRCLDHNRFATDGMSGIQGSRIAFSTLEGRPSANEFDTSAILQDWVTATDIRVIFHRLQSPLAVQTMKARLKSEFLASSTLSPSSLLAAGTGTYALSDFSVGGRCKCNGHASRCVRNGEGLLECECKHNTAGRDCEKCKPFYFDRPWARATVQNANECKALKKSITSKGSDLKKKKKQKVNEERSDEIFKKNIEVVLSLVKTVPFKNSSAVRKWILKLFDPHLERSVRNAYLAWLMYQMQNMIIFEPFDAIPPKELENPRKFMNPSKWKSLMKESSKDLQNRFLLKVSPQVLASLQYENPAPANFLSDQPEPASSGFVVYGGCFSNHFTK
| Type | Start | End | Length |
| CDS |
11092 |
11603 |
512 |
| CDS |
14897 |
15992 |
1096 |
| intron |
11604 |
14896 |
3293 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001868444 |
netrin [Culex quinquefasciatus] gb|EDS26885.1| netrin [Culex quinquefasciatus] |
1e-131 |
| InterPro |
IPR002049 |
EGF-like, laminin |
|
| InterPro |
IPR008211 |
Laminin, N-terminal |
|
| Pfam |
PF00055.12 |
Laminin N-terminal (Domain VI) |
1.9e-41 |
| Pfam |
PF00053.19 |
Laminin EGF-like (Domains III and V) |
2.2e-08 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07846 |
| Pn.00509 |
| Pn.05327 |
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000079662 |
| H. sapiens |
ENSP00000443259 |
| A. aegypti |
AAEL003048 |
| D. melanogaster |
FBgn0015773 |
| B. mori |
BGIBMGA011925-TA |
| A. aegypti |
AAEL003047 |
| D. plexippus |
DPOGS210369PA |
| D. melanogaster |
FBgn0015774 |
| C. quinquefasciatus |
CPIJ016785 |
| H. sapiens |
ENSP00000173229 |
| T. castaneum |
TC002285 |
| C. quinquefasciatus |
CPIJ018063 |
| A. gambiae |
AGAP000225 |
| A. aegypti |
AAEL012304 |
| P. vanderplanki |
Pv.10980 |
| A. aegypti |
AAEL003024 |
| H. sapiens |
ENSP00000441611 |
| N. vitripennis |
NV17407-PA |
| H. sapiens |
ENSP00000293973 |
| A. mellifera |
GB10844-PA |
| C. quinquefasciatus |
CPIJ018929 |
| H. melpomene |
HMEL013844-PA |
| P. vanderplanki |
Pv.10976 |
| P. humanus |
PHUM519850-PA |
| B. mori |
BGIBMGA011931-TA |
| H. melpomene |
HMEL013840-PA |
| P. vanderplanki |
Pv.10978 |
| S. invicta |
SI2.2.0_14810 |
| A. mellifera |
GB15820-PA |
| A. gambiae |
AGAP000228 |