MidgeBase gene description page [Pn.05318]
Outline
| Gene ID | Pn.05318 |
| Type | Protein coding gene |
| Scaffold | PnScaf4602 |
| Start | 12576 |
| End | 15193 |
| Direction | - |
Sequence
Transcript: 2415 (bp)
ATGGAATCCAATGGTCTAACTGTGAAGCAAAAGGAAGATGCACTTAATTACTGTCTTAAAAAAGTGCCCGGCGTCGATTCGATGGATGTGCAAGATGCCCTCTTGAAGAGTGACTGGGACAAAGAGATCGCTGTAGAAATCCTCAAAAAACTGCCTGCAAAAGGAAACAAACGAACATACTATCAACATCGTGCGAGTGACAACAATCCCAACACATATCATGTTGCGAAAAAACCACGACGCAATCAAGACGATGAAAATGAGGAAACTGGATCGGACGAAGAGCACGAATTTTCTAAGCAGGCGGTCTTTGACTCTGACAGTGAAAATGATGGAACTTATGCACCGGAGATGAATTTGCAACGAAAAGAGGTCTTTGAGTTTTTCAATAATGCGAACGTTGGGGAGTTGACTTGTGTCAAGGCTTGCTCACTGAAGAAGGCTGAAATCATAGTTGAAAATCGCCCATATCGCAACTGGGAAGAACTTGTGGCCAAATGCAAAGAGAAGCCGCTTCAAACTGACCTTCTCAACAATTGCCAAGAGTTTATTGACAAAAGAAATAATTTGAAGAAGCTCATTAAGAAGTGCAAGGCCATTGTGTTAAAACTCGAAAAAGCTGTCGAAGAGGGAGCCGGAATTTCAGAACAACCGTTTTCATTAAACGAAGAGTACAAGCTCTCGGACTATCAGCTTGTAGGACTCAATTGGCTAGCCGTATTACATCAAAATGGTACGAATGGAATTTTGGCAGACGAAATGGGTCTCGGAAAGACTATACAAATAATCGCATTTCTCGCATATCTGAAAGAGACGCATCAACAACTGGCGACACATGTCGTTTGCGTCCCATCGAGTACATTAGATAATTGGGCTAAAGAGTTTTCAAAATGGTGTCCCTCGTTGAATGTTGCAAAGTATTACGGAAGTCAGGAGGAGAGACGCATAATGCGATTTAAGTGGGCAAAAGAGGGATTCGACGATACAGACGTAATTCTCACAACCTATCACGTCATCGGCTCATCAAACGAGGACAAGAAAATGTTTCGAGTATCTTCATTCCACTATGTGATTTTTGATGAGGCTCATATGTTGAAAAATATGATGACGCAACGCTATACCACGCTGTTGCGAATCAATGCACAGCGAAGAGTCCTGCTTACGGGCACACCCTTGCAAAACTCGTTGCTTGAACTGATGTCTCTCCTGTGTTTTGTTATGCCAAAGCTTTTCGCCAACAAAACCGAAGACATAAAGGCTCTTTTCTCCAAAAAAGCGCCGAAACTCGAAGACGGATCGGAGCAAACCAATGACTTTGAGCAGTCTCAAATTGAAAGAGCTAAAAACATAATGAAGCCCTTCATTCTTCGACGTCTCAAGAAAGACGTATTAACATTTTTACCGAAAAAAACGGAGGTAATTGAAAAAGTTAAACTCCTACCGGACCAACAGCATAAATATCAACTTTTAATTGATGAATACAAGAATATTGATCCCACAAATGAGTCATATATGGGAAGAGGAAATTCAATTATGATGGATATGAGAAAGCTCGCCAATCACCCACTACTGCTCCGATATTATTTTACTGATGAACGTTTGCATGAAATATCAAAAGTATTGGCTCGTGACAAAGTTTACAAGAACAACAATCCTAAAGAAATTTTCGAAGACATTGCACCACTCTCTGACTTAAAAATTCATCAGTTGGCCGACAAATATCCATCAATTACTAATTTGGTGAAAATTCCCGATAACATTATTCTTAACTCTGGAAAGTTCAAGTATTTCGATACTTTATTGCCGAATTTGAAGGCAGAGGGCCACCGTGTACTAATATTTTCCCAGTTTGTTATGATGCTTGATATCATTGAAAAATACCTTATGATTCGAGGAATGAAATATGTAAGACTCGATGGCAGTACTGCTGTAACAGAACGTCAAGATTTGATAGAGGAATACACGTCTAATCCTGAAATTTTTATATTCCTGTTGAGCACAAAAGCTGGAGGCTTAGGCATCAATCTTACGAGTGCAGATCGTGCAATCATTTCCGATTTAGATTTCAATCCGTGGAATGATAAGCAGGCAGAAGACCGTTGTCATCGAATCGGTCAGCAGAAAGAAGTAGTAATTTACAAGCTGATAGCTGAAGGTACAATCGAGGAAGGCATGTATGTGATCGCCAAAGAAAAGTTGGCTTTAGAGCGGGAAGTAACGTCGAGCAATCACGAGATGGATTCAGCAGAGGAGCACAAGTGTCTCGTAAGATTAATGAAGATGGCGCTCGGGTTTAACGAACAAGCTGCAGAAGCTTTCCTATCACCCAGCAAAAACGGAACGTCCTCCTCACAAGAGGATAAAAATGAAGAGGAAATTGTTTACGAGGATGTTGAATATCTAATTGATGAAAAT
Protein: 805 (aa)
MESNGLTVKQKEDALNYCLKKVPGVDSMDVQDALLKSDWDKEIAVEILKKLPAKGNKRTYYQHRASDNNPNTYHVAKKPRRNQDDENEETGSDEEHEFSKQAVFDSDSENDGTYAPEMNLQRKEVFEFFNNANVGELTCVKACSLKKAEIIVENRPYRNWEELVAKCKEKPLQTDLLNNCQEFIDKRNNLKKLIKKCKAIVLKLEKAVEEGAGISEQPFSLNEEYKLSDYQLVGLNWLAVLHQNGTNGILADEMGLGKTIQIIAFLAYLKETHQQLATHVVCVPSSTLDNWAKEFSKWCPSLNVAKYYGSQEERRIMRFKWAKEGFDDTDVILTTYHVIGSSNEDKKMFRVSSFHYVIFDEAHMLKNMMTQRYTTLLRINAQRRVLLTGTPLQNSLLELMSLLCFVMPKLFANKTEDIKALFSKKAPKLEDGSEQTNDFEQSQIERAKNIMKPFILRRLKKDVLTFLPKKTEVIEKVKLLPDQQHKYQLLIDEYKNIDPTNESYMGRGNSIMMDMRKLANHPLLLRYYFTDERLHEISKVLARDKVYKNNNPKEIFEDIAPLSDLKIHQLADKYPSITNLVKIPDNIILNSGKFKYFDTLLPNLKAEGHRVLIFSQFVMMLDIIEKYLMIRGMKYVRLDGSTAVTERQDLIEEYTSNPEIFIFLLSTKAGGLGINLTSADRAIISDLDFNPWNDKQAEDRCHRIGQQKEVVIYKLIAEGTIEEGMYVIAKEKLALEREVTSSNHEMDSAEEHKCLVRLMKMALGFNEQAAEAFLSPSKNGTSSSQEDKNEEEIVYEDVEYLIDEN
| Type | Start | End | Length |
| CDS |
12579 |
12757 |
179 |
| CDS |
12817 |
15039 |
2223 |
| CDS |
15181 |
15193 |
13 |
| intron |
12758 |
12816 |
59 |
| intron |
15040 |
15180 |
141 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001844501 |
chromo domain protein 1 [Culex quinquefasciatus] gb|EDS37291.1| chromo domain protein 1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| InterPro |
IPR000330 |
SNF2-related |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF06733.10 |
DEAD_2 |
0.00046 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
6.7e-09 |
| Pfam |
PF00627.26 |
UBA/TS-N domain |
0.0017 |
| Pfam |
PF00176.18 |
SNF2 family N-terminal domain |
2.5e-69 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
3.1e-11 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
1.7e-10 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000351947 |
| A. gambiae |
AGAP009980 |
| T. castaneum |
TC006624 |
| A. mellifera |
GB17523-PA |
| D. plexippus |
DPOGS200823PA |
| H. sapiens |
ENSP00000415576 |
| B. mori |
BGIBMGA009877-TA |
| S. invicta |
SI2.2.0_03111 |
| D. melanogaster |
FBgn0032157 |
| P. humanus |
PHUM233510-PA |
| H. melpomene |
HMEL011474-PA |
| H. sapiens |
ENSP00000423286 |
| M. musculus |
ENSMUSG00000029920 |
| C. quinquefasciatus |
CPIJ003115 |
| N. vitripennis |
NV13096-PA |
| A. aegypti |
AAEL007558 |
| P. vanderplanki |
Pv.02294 |
| H. sapiens |
ENSP00000346217 |