MidgeBase gene description page [Pn.05301]
Outline
| Gene ID | Pn.05301 |
| Type | Protein coding gene |
| Scaffold | PnScaf4595 |
| Start | 3551 |
| End | 6548 |
| Direction | + |
Sequence
Transcript: 2499 (bp)
ATGGACGAGAGCTCAGTCATTCCATTAATAAGCAACAACAGCTTCGAACTGAATGCCATTTCCCTATCAGATGACTCGGGATTCTCCGGATTTACGTCGCATACGAGAGAAAATGAACTCAACTCGGATGAGTTTGAGTCGCAATTTGACTCCGACAGCGGAATGAGCGCTGAAAATTTCCATACAATCAAAAAAATTTCCAGCTCCATTATCTACGAGCCTCCGTTAGAATTCCAGGACAATTACAGTGTTTCAAAGTTCTCACAGCCAAATTACTCAAACAACACGACGACGAGCACTACGCCAAGCACTGTAATTCGAACGACTCACATCCAGAGCTACGCATCGAGGCTAACTCAAAATATAATTAGGAGAGCTATAAGTTCCTTCCACAATCTTGCCACTAAAGAAGTCCACTATTGTGAGAAACATGCCGCAGCGAAGTTAAAGAAACAACAGCAAAAGAAAGAAATGGAGAGCGAATATTTAAAGTCAAAGAAAGCAGCATTTGTGTCCCATGGATACAGCAATATTTATGGCAGTGATTCCTTCCTTAATGCGTATAATCGACCGACTTATTTGTCGAGCGGCAAGAGCAGTAATTCCAACATAAATATTGTCGACTCCGACGAGGACGACATTTACGATGAGCCAAACGCAGAGTACGACGTAATCTACAAAGATAATAAAGACACTATACTGTGCACCAAGAGAATTGTTCGATCACTCGAAAAGAAAAAGGTTGACACTCGATCTCATCTCTATTGTAACACGGAAGAGTTGTTTTACGATAAACTGCGGTCGAAAGCGCACTCATCAGCAATGAGCAACAGCAATCACAGCAGTTACAAGGCTTCCCACCAGCATCAACACGATGACACCAACAGTAGCAGCAATATTAATCGCTTTCAAAGCAACAGTTTCCAGAAGAAGTTTGACAAGTTCCTTCGAAGAAAATTTCTTACGACAAATCTAACGCCAACAACCACCACATCGTCAATTTTCTATAGCTTTTGCCATACGGGAGCTCAGAACGTCAATACGTCGAATCCAAATTCAAAGAGCTCGCTCAACAGTCGACTCTCGAGCTCACACAATTCACTCACCGTTCCGACTAATAAGGCAGATGACTCCATTTTCATTACGCAAGCAATGTCGCATGATCAGCTCGGTCATAATATTGAAATCAGTGATTTTTACAATGTACCGCTCGACTCCGACATTTATACGCTGCCAATTGATGTGATCAATAACAATGGCGAGGAGCAACAGCACCATGCGTACAGACATTATCGTGCCATGTCCGATAATAACTTGCTGAGCGCCGGCTGCAGCAATGCTAATGGAGGAGTCAAGTGTCACAAGTTTCATAGGAGCAAAAACAAGCGAAGCAAGCGCAAAAAGCGAACGGACGCCGTTCATGACAGCAGCAATGTGTCGTCGCGAAAACTGTCTAACGCGAGCTCGGGTGTTGTCACATCGCACTCATTCACTGTAAGCCATGAAAATCGTAAAGTGTCATCGGAGAAGACCAAGACAAAAGTCTTGCAATCATCTAGCAATTATGCAAACGATTCAGGTTCAAAGCTAAGGAAAAACTCCGACAGTACTGCTAAAGTGAGGATCAGTGACTCGAATAATAATACCAATGCAGGCAACAATAAATACGGAAGTACAACGGCTACAACTAAGAAGTCACAATTCTCCATCAGCTTAAATTTGAAGCAGAAGTTCTGCAGCATTTTTAGATTTAAGAAATCTCACCAGACATCGCCGTCTAGAAACGTAATTCCCGCACAGGATGAGGAGAAGAAAGTCAACTTATTAACCAGAGCTTTACCGCCACTACCATCGACAGATGCCAAAGTCAGCGCGGACCCACAGAGTGCAGACAAGAAGAATATCGAGACAATGGACTTTGCAGCCAATATAGAGAAAGTCCGAGAGTGTGGCTGGTATTGGGGTCCATTAACCTCGGAGGCGGCCGAAAAAATCTTATCTAATGAGCCAGATGGAAGCTTTATAGTGAGAGACAGCTCGGACTTGAACTACATATTTTCATTGACTGTGAAGCTGAATGGCTGCATACGACATGTGAGGATTGAGCAGGAGCAGGGAACATTTTCTTTCGGCTCGTGTGCTCAAATAAAATGCTCCTACAAATCGCGAACCATAAAGGAGTTTATCGAGAATGCAGTGGAACATTCGAGGAGTGGGCGCTATTTATTCTTCCTGCATCGTCGACCAGAGCATGGTCCAATGCGTGTTCAACTTTTAAACCCCGTTTCAAGATTTCGTCATGTTCAGAGTCTGCAACACATGTGCAGATTTGTTATTTTGAAAGCTGTGCAACGTAAAGATCTAATCGAAACCTTGCCACTTCCAAGACGCTTACTCGATTATCTCCAGAATAAAAATTTCCTCTCAGAATTGATCGAAAGCGACAGTTCATCGCAATCACAAGTCTATGGAGAGAACAACAACAATTCGGATACTAAC
Protein: 833 (aa)
MDESSVIPLISNNSFELNAISLSDDSGFSGFTSHTRENELNSDEFESQFDSDSGMSAENFHTIKKISSSIIYEPPLEFQDNYSVSKFSQPNYSNNTTTSTTPSTVIRTTHIQSYASRLTQNIIRRAISSFHNLATKEVHYCEKHAAAKLKKQQQKKEMESEYLKSKKAAFVSHGYSNIYGSDSFLNAYNRPTYLSSGKSSNSNINIVDSDEDDIYDEPNAEYDVIYKDNKDTILCTKRIVRSLEKKKVDTRSHLYCNTEELFYDKLRSKAHSSAMSNSNHSSYKASHQHQHDDTNSSSNINRFQSNSFQKKFDKFLRRKFLTTNLTPTTTTSSIFYSFCHTGAQNVNTSNPNSKSSLNSRLSSSHNSLTVPTNKADDSIFITQAMSHDQLGHNIEISDFYNVPLDSDIYTLPIDVINNNGEEQQHHAYRHYRAMSDNNLLSAGCSNANGGVKCHKFHRSKNKRSKRKKRTDAVHDSSNVSSRKLSNASSGVVTSHSFTVSHENRKVSSEKTKTKVLQSSSNYANDSGSKLRKNSDSTAKVRISDSNNNTNAGNNKYGSTTATTKKSQFSISLNLKQKFCSIFRFKKSHQTSPSRNVIPAQDEEKKVNLLTRALPPLPSTDAKVSADPQSADKKNIETMDFAANIEKVRECGWYWGPLTSEAAEKILSNEPDGSFIVRDSSDLNYIFSLTVKLNGCIRHVRIEQEQGTFSFGSCAQIKCSYKSRTIKEFIENAVEHSRSGRYLFFLHRRPEHGPMRVQLLNPVSRFRHVQSLQHMCRFVILKAVQRKDLIETLPLPRRLLDYLQNKNFLSELIESDSSSQSQVYGENNNNSDTN
| Type | Start | End | Length |
| CDS |
3551 |
3667 |
117 |
| CDS |
3849 |
5589 |
1741 |
| CDS |
5655 |
5743 |
89 |
| CDS |
5809 |
5872 |
64 |
| CDS |
5933 |
6248 |
316 |
| CDS |
6310 |
6445 |
136 |
| CDS |
6510 |
6545 |
36 |
| intron |
3668 |
3848 |
181 |
| intron |
5590 |
5654 |
65 |
| intron |
5744 |
5808 |
65 |
| intron |
5873 |
5932 |
60 |
| intron |
6249 |
6309 |
61 |
| intron |
6446 |
6509 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_397211 |
PREDICTED: hypothetical protein LOC413772 [Apis mellifera] |
9e-94 |
| InterPro |
IPR001496 |
SOCS protein, C-terminal |
|
| InterPro |
IPR000980 |
SH2 domain |
|
| Gene Ontology(BP) |
GO:0035556 |
intracellular signal transduction |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00017.19 |
SH2 domain |
2.8e-11 |
| Pfam |
PF07525.11 |
SOCS box |
6.9e-13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV16810-PA |
| P. humanus |
PHUM500510-PA |
| A. aegypti |
AAEL006949 |
| B. mori |
BGIBMGA000669-TA |
| A. mellifera |
GB13951-PA |
| S. invicta |
SI2.2.0_15267 |
| D. melanogaster |
FBgn0030869 |
| P. vanderplanki |
Pv.15517 |
| T. castaneum |
TC002965 |
| P. vanderplanki |
Pv.09664 |
| A. gambiae |
AGAP000880 |
| D. plexippus |
DPOGS206160PA |
| H. melpomene |
HMEL013396-PA |
| D. plexippus |
DPOGS200901PA |
| P. vanderplanki |
Pv.12468 |