MidgeBase gene description page [Pn.05271]
Outline
| Gene ID | Pn.05271 |
| Type | Protein coding gene |
| Scaffold | PnScaf4591 |
| Start | 8447 |
| End | 11357 |
| Direction | - |
Sequence
Transcript: 2265 (bp)
ATGTTTGTAGCTGATAATGGAAACTACACCATCATTGGCCTTTGCTCTGTTTTAAGAGCAATTTGCCGACTCATGCAAACGTCTGAGACTGCCGGACAATTAGCTACACAATTATTAGGCCACAAAGACAATTGCTTACTGGCGACTTCCGAAGTCAGTTTATGGGTCAGCTTTTGTGAGCGAGAAATGATATCGTGCGCTGAAAACCTTTTAAAAACACCTTTTCGCAACGAAGACGATTTGCTTCTTTTTCCAATCGAAATGCTTAAATTGGAGCACGAATTCAAGAATCCAATGAGATGTCACAACGTCTATAAAATCGTTAGAGAAACGAAAAAAAATCGATCAATACAGAGCGAGAGCGCTACTAAGGTAGATCTCGAGCACAAGTATTGTCATGGAAATGAAGCCAATTTATCCGATTATGTGCTCTATGTCATCTTCAAACTGATTTTTGTGACAGTTATCGATGACGAGAACGTTTTTAAAAATAGCTTGCCTCTCGTTATGAAATGGCTTCAAAACATGGAATATGAAATAGCAAACTTGAAGGAAACTACGACTAATCTCCTGATTACCTGCAGAAAAATTAGAATACGCTTCGTGGAGGAGTTGCCGTGCGTAGTGCCGAACGGAAAATGTTTTAGCTTGTTTAAGCGGCAGTTGAGTGGGCAGAAGACCAAGAAAAAAGCCCGCAAGATGCTCGTTGACCAAAATGAAATTGAATCAATATTAGCAAAATTGAAGGCGTTAGACTTTGAAATTAAGAGCGAGCCAGGAAATGTGAGCGAGCAAAATTCTTTAAATGACTCATTCATTGAAGAGCTATTGACGTGTGGCGAACTTCCTGCTGATCGTTTTGTGCGAAAGAAACATCAATTGAAAAGCTTGGCCGCCAAAGTACTAAAAATAGCGCATGATGGAGACATTATCGTTGACTTTTGTTCTGGTACCGGTCATCTTGGCATTTTGATTGCGAAGTTGCTACCAAAATGCCGCATTATAATCTTGGAGAACAAGGAGGAGTCGATTAAGAGGGCATCGCAAAAGTCAAAATCTCTGCAGCTCACAAATGTGTCGTTCTATCAGTGCAATTTGGAGTATTTTAACGAAAAGTTCACTGTGGGCGCTAGTCTGCATGCATGCGGCGTTGCTACAGATTTATTGCTTAATAAATGCTACAAAATGAAAGCAAGTTTTGTTTGCAGTCCATGCTGCTATGGAAAGATTCAAGACCTGGGAAACCTACCACAGAGCAAAATTTTTAAAGACGTTTTCAGCACACGTGAATTTATAAATATTTCTCATTGCTCCGACCAAACACACGACGAGAAAAATGTTAAAAACGTAAACATGGAAAAGGCTCAGCAAGGATACTTCTGTATGGATGTCATAGATACCGATCGTTCGCTTCGGGCGAAAGAGTTGGGATACGAGGTGAAACTGACGCGCTTAGTGCCGGAGGACTGCACTCCGAAAAATCGTCTCTTAAAATTCAACGAGACACCATCCGACTCGGCACCAATCCCCGTTCAGACACGTCAATCACGCGTTATGCATTTCGAGGATAAAACTAAGGCCTTCAGACAAGTTGTCAACAAGGACCAATTGGCAAAATTAAAAGAACAACGACTGCCGCCAGTAGAACATATTCAACTGGCGAATGGAAGAAGAAGAATGCATCAGAACATGCCTCTGAGGAGAAATCTGGAAATGAAGAATGCCAAAAGAATGAAAATTACTGCCGTTCATTACGATGGCGACTCGACAAAGTTGGAAGAAACTCGTCACCATAGCTATCGGGAAAATGGAAGAGTCGAGTTGAATAGAAACGAGTACATGCACTGGAAGGCAGCGGACTGGGTGACAGATCATGGAATGGAGAAATTCTTTCAAATGGATTCTACTGGTACGCTCACCATCAAAGACCATGGTTTATTTTTAATATATGCTCAGGTCTATTACTATGACAATCATGATCTGAATGGATACGAAATCGTACACAATAATCAAGTAAAGTATCAGTGCACAACAATGACACACACAGGTTCACAGGGCGGACCGAAAACAAATTCGTGCTACACTTCAGGCCTAATTCATTTGAGAAGCGGTGATAAAATTCGATTGCGTGATGCCGGCATGCATCGATTGGTGCTGATGCAGCCGAACAAAAGCTTCTTTGGCTTAATCAAAATCAATCTATTGCCGTCGATTGCGACAGGCGATGGCAGCAGCAGCAGCAGCAGCACAGACATTGAGCGATTT
Protein: 755 (aa)
MFVADNGNYTIIGLCSVLRAICRLMQTSETAGQLATQLLGHKDNCLLATSEVSLWVSFCEREMISCAENLLKTPFRNEDDLLLFPIEMLKLEHEFKNPMRCHNVYKIVRETKKNRSIQSESATKVDLEHKYCHGNEANLSDYVLYVIFKLIFVTVIDDENVFKNSLPLVMKWLQNMEYEIANLKETTTNLLITCRKIRIRFVEELPCVVPNGKCFSLFKRQLSGQKTKKKARKMLVDQNEIESILAKLKALDFEIKSEPGNVSEQNSLNDSFIEELLTCGELPADRFVRKKHQLKSLAAKVLKIAHDGDIIVDFCSGTGHLGILIAKLLPKCRIIILENKEESIKRASQKSKSLQLTNVSFYQCNLEYFNEKFTVGASLHACGVATDLLLNKCYKMKASFVCSPCCYGKIQDLGNLPQSKIFKDVFSTREFINISHCSDQTHDEKNVKNVNMEKAQQGYFCMDVIDTDRSLRAKELGYEVKLTRLVPEDCTPKNRLLKFNETPSDSAPIPVQTRQSRVMHFEDKTKAFRQVVNKDQLAKLKEQRLPPVEHIQLANGRRRMHQNMPLRRNLEMKNAKRMKITAVHYDGDSTKLEETRHHSYRENGRVELNRNEYMHWKAADWVTDHGMEKFFQMDSTGTLTIKDHGLFLIYAQVYYYDNHDLNGYEIVHNNQVKYQCTTMTHTGSQGGPKTNSCYTSGLIHLRSGDKIRLRDAGMHRLVLMQPNKSFFGLIKINLLPSIATGDGSSSSSSTDIERF
| Type | Start | End | Length |
| CDS |
8450 |
8758 |
309 |
| CDS |
8900 |
9051 |
152 |
| CDS |
9228 |
9311 |
84 |
| CDS |
9401 |
9629 |
229 |
| CDS |
9805 |
10197 |
393 |
| CDS |
10260 |
11357 |
1098 |
| intron |
8759 |
8899 |
141 |
| intron |
9052 |
9227 |
176 |
| intron |
9312 |
9400 |
89 |
| intron |
9630 |
9804 |
175 |
| intron |
10198 |
10259 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_001193394 |
glutathione S-transferase C-terminal domain-containing protein [Nasonia vitripennis] |
4e-92 |
| InterPro |
IPR008983 |
Tumour necrosis factor-like |
|
| InterPro |
IPR025714 |
Methyltransferase domain |
|
| InterPro |
IPR006052 |
Tumour necrosis factor |
|
| Gene Ontology(BP) |
GO:0006955 |
immune response |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005164 |
tumor necrosis factor receptor binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF05175.9 |
Methyltransferase small domain |
4.1e-06 |
| Pfam |
PF01209.13 |
ubiE/COQ5 methyltransferase family |
0.015 |
| Pfam |
PF08242.7 |
Methyltransferase domain |
0.081 |
| Pfam |
PF00229.13 |
TNF(Tumour Necrosis Factor) family |
1.1e-11 |
| Pfam |
PF12847.2 |
Methyltransferase domain |
1.1e-08 |
| Pfam |
PF13847.1 |
Methyltransferase domain |
1.6e-13 |
| Pfam |
PF13659.1 |
Methyltransferase domain |
0.0044 |
| Pfam |
PF13649.1 |
Methyltransferase domain |
0.043 |
| Pfam |
PF13679.1 |
Methyltransferase domain |
1e-13 |
| Pfam |
PF02527.10 |
rRNA small subunit methyltransferase G |
0.0004 |
| Pfam |
PF05206.9 |
Methyltransferase TRM13 |
5.2e-09 |
| Pfam |
PF02390.12 |
Putative methyltransferase |
2.9e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP008668 |
| T. castaneum |
TC009836 |
| D. plexippus |
DPOGS215458PA |
| C. quinquefasciatus |
CPIJ001574 |
| H. sapiens |
ENSP00000422858 |
| H. melpomene |
HMEL008357-PA |
| H. sapiens |
ENSP00000378218 |
| B. mori |
BGIBMGA007488-TA |
| P. vanderplanki |
Pv.03082 |
| H. sapiens |
ENSP00000378216 |
| P. humanus |
PHUM037810-PA |
| H. sapiens |
ENSP00000422354 |
| S. invicta |
SI2.2.0_80376 |
| A. mellifera |
GB19050-PA |
| D. melanogaster |
FBgn0032724 |
| N. vitripennis |
NV17982-PA |
| M. musculus |
ENSMUSG00000028018 |
| A. aegypti |
AAEL007017 |
| H. sapiens |
ENSP00000353695 |