MidgeBase gene description page [Pn.05246]
Outline
| Gene ID | Pn.05246 |
| Type | Protein coding gene |
| Scaffold | PnScaf4544 |
| Start | 22246 |
| End | 23952 |
| Direction | + |
Sequence
Transcript: 555 (bp)
ATGGATATATCAGGAACGATTAGCAATAGCGGAAGCTCCCTGAACATGCGCCCTCTCTTTGCCGGATATCCCTTCCAAGGGCAAGGCCGCGTGAACCAGCTCGGCGGTGTCTTTATCAATGGCCGGCCACTTCCGAATCACATACGGCTGAAAATCGTCGAGATGGCAGCGTCGGGCGTGCGACCATGCGTGATTTCGCGGCAACTAAGGGTCTCCCACGGGTGCGTGTCGAAAATTCTGAACCGCTATCAGGAGACGGGCTCGATACGACCTGGAGTCATTGGCGGCAGCAAACCGCGCGTCGCAACCCCCGACATTGAAAATCGGATAGAGGAGATGAAGAAGGAAAATCCCGGGATTTTTAGCTGGGAAATCAGGGAGCGATTGATAAAGGAAGGAGTTGTGGATCCACCGTCCGTGTCTAGCATATCGAGATTACTGCGCGGCGGCATGAGTGATAGAAAAGATGATCGAAAGGACTATTCAATCCACGGCATTCTGGGTGAATATCACAGACGCGTCGGTGTTTTTCTCTTGTTGTTGCGAGCGGCCGAG
Protein: 185 (aa)
MDISGTISNSGSSLNMRPLFAGYPFQGQGRVNQLGGVFINGRPLPNHIRLKIVEMAASGVRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRVATPDIENRIEEMKKENPGIFSWEIRERLIKEGVVDPPSVSSISRLLRGGMSDRKDDRKDYSIHGILGEYHRRVGVFLLLLRAAE
| Type | Start | End | Length |
| CDS |
22246 |
22324 |
79 |
| CDS |
22984 |
23297 |
314 |
| CDS |
23562 |
23673 |
112 |
| CDS |
23900 |
23949 |
50 |
| intron |
22325 |
22983 |
659 |
| intron |
23298 |
23561 |
264 |
| intron |
23674 |
23899 |
226 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002063073 |
GK21727 [Drosophila willistoni] gb|EDW74059.1| GK21727 [Drosophila willistoni] |
8e-75 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR001523 |
Paired domain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF03734.9 |
L,D-transpeptidase catalytic domain |
0.1 |
| Pfam |
PF13565.1 |
Homeodomain-like domain |
3.6e-05 |
| Pfam |
PF00292.13 |
'Paired box' domain |
3.5e-70 |
| Pfam |
PF13384.1 |
Homeodomain-like domain |
5.4e-07 |
| Pfam |
PF13551.1 |
Winged helix-turn helix |
1.1e-07 |
| Pfam |
PF12802.2 |
MarR family |
0.01 |
| Pfam |
PF13518.1 |
Helix-turn-helix domain |
0.0018 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes