MidgeBase gene description page [Pn.05209]

Outline

Link to gbrowse

Gene ID Pn.05209
Type Protein coding gene
Scaffold PnScaf4480
Start 18271
End 18872
Direction -

Sequence

Transcript: 423 (bp)

 ATGAGTGTGAAACTAAAATCTGTGTTCAAAATATTCTGTGTCTCAGTGGCCTTTGTTTTGCTCTGCTACATCGAGGGAAAATTTGAGATTTTTTCGTCGAAATCTGCGAAGCCGCAAATGTCGAGTCAAAAAATTTTCTTCACCGACTTTGAGGTGTTTGGAACCGTGCAAGGTGTTTTCTTCCGAAAGCACACTGAGGAGGCCGCCAATAAATTCAAAATTCGCGGCTGGTGCATGAACACCAAAGAAGGAACTGTTAAAGGACAAATTGAGGGAGAAGAGCCTGCGTTCTCCATGATGAGGACCTGGCTATCGTTGGAGGGAAGTCCTCAGTCGCGCATCGAGAGGGCCGAATTCGCGAACTTTAAGGAAATTCCCAACTACACCTTCGACAAATTCGAAATCCGAAGAGTTCCCAAGAAA 

Protein: 141 (aa)

 MSVKLKSVFKIFCVSVAFVLLCYIEGKFEIFSSKSAKPQMSSQKIFFTDFEVFGTVQGVFFRKHTEEAANKFKIRGWCMNTKEGTVKGQIEGEEPAFSMMRTWLSLEGSPQSRIERAEFANFKEIPNYTFDKFEIRRVPKK 
Type Start End Length
CDS 18274 18397 124
CDS 18456 18565 110
CDS 18622 18638 17
CDS 18701 18872 172
intron 18398 18455 58
intron 18566 18621 56
intron 18639 18700 62

Auto annotation result

Program/Analysis Accession Description Score/Expectation
BLASTP/NCBI-nr XP_002017293 GL22235 [Drosophila persimilis] ref|XP_002137790.1| GA27428 [Drosophila pseudoobscura pseudoobscura] gb|EDW34393.1| GL22235 [Drosophila persimilis] gb|EDY68348.1| GA27428 [Drosophila pseudoobscura pseudoobscura] 1e-27
InterPro IPR001792 Acylphosphatase-like
InterPro IPR017968 Acylphosphatase, conserved site
InterPro IPR020456 Acylphosphatase
Gene Ontology(MF) GO:0003998 acylphosphatase activity
Pfam PF00708.13 Acylphosphatase 4.7e-21

Expression level (RPKM)

Paralog/Ortholog genes

Paralogous genes

Gene ID
Pn.13047

Orthologous genes

Species Gene ID
B. mori BGIBMGA005429-TA
A. mellifera GB19157-PA
C. quinquefasciatus CPIJ011780
H. sapiens ENSP00000238618
D. melanogaster FBgn0033893
A. aegypti AAEL008369
M. musculus ENSMUSG00000008822
D. melanogaster FBgn0085190
H. sapiens ENSP00000451581
H. sapiens ENSP00000450873
P. vanderplanki Pv.06513
P. humanus PHUM473470-PA
D. plexippus DPOGS213829PA
P. vanderplanki Pv.10657
D. melanogaster FBgn0038363
P. humanus PHUM256360-PA
H. melpomene HMEL012684-PA
N. vitripennis NV12864-PA
S. invicta SI2.2.0_15978
D. plexippus DPOGS202741PA