MidgeBase gene description page [Pn.05168]
Outline
| Gene ID | Pn.05168 |
| Type | Protein coding gene |
| Scaffold | PnScaf4435 |
| Start | 66034 |
| End | 66943 |
| Direction | + |
Sequence
Transcript: 786 (bp)
ATGCTGCGTTCCTTGCTCGCGAAAAATGGATTTAACTCGGTAGCCGCCCATCTTCTGAACGCTAATAATGCATTAGCACAACAAGTCAGAACAACTTTTATTCTCAAAAGAATAACACCACCGCCATTGACGAAGAAAAACCACAAGCCCAAGAAGCTGAGAGGAAGAAACTACAATTATGAGCTTGTGGAGGACACAAATGTGAAGACAAAGCCCGACATTGAAGTGGTGCTGAAGCAATTTGTCGATGGCGTCGGCAAAAAAGGAGATGTGGTCAAAGTGAGGCCGACTTTCGCATACAACAAACTCCTCATGACTGACCTTGCAACGTACGCGACTCCGGAGAACATTGAAAAGTACAAGGTGAAGGAGGGTGAGGAACTGGAAGAGGAAAAGCACAGCTCACAATTCGCCAAGAGAACCGTAAATATGCTCCAGAACCGTGTTTTTGCAATTGTCATGAACAAAGAGCAACCGTGGGTTGTTGAACCGTGGCACATAAGAGCTTCGCTGCGTAAATGCGGCTATCACATACTGTCGGACGACGCCATCGAGCTGCCAGCAGAAAAAATTACCGGTCCAGACATGCAGAAACAAAACAAGGAATTCACCGTTACGGTCACAGTTAATAAGATGGAAAAGGCACAAGTGAGATGTAGAATTCACCACTGGAGTACAAGCCCAGGTGACCGTCTGCCGTACGTGTATGAGCATTGGATGCAAGATAGTGAGCCTCTATTTGCTCAGCCAACACCGAAATCGGAGACACAAAACCAATCAAAGTCT
Protein: 262 (aa)
MLRSLLAKNGFNSVAAHLLNANNALAQQVRTTFILKRITPPPLTKKNHKPKKLRGRNYNYELVEDTNVKTKPDIEVVLKQFVDGVGKKGDVVKVRPTFAYNKLLMTDLATYATPENIEKYKVKEGEELEEEKHSSQFAKRTVNMLQNRVFAIVMNKEQPWVVEPWHIRASLRKCGYHILSDDAIELPAEKITGPDMQKQNKEFTVTVTVNKMEKAQVRCRIHHWSTSPGDRLPYVYEHWMQDSEPLFAQPTPKSETQNQSKS
| Type | Start | End | Length |
| CDS |
66034 |
66123 |
90 |
| CDS |
66185 |
66514 |
330 |
| CDS |
66575 |
66940 |
366 |
| intron |
66124 |
66184 |
61 |
| intron |
66515 |
66574 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309139 |
AGAP000950-PA [Anopheles gambiae str. PEST] gb|EAA04926.5| AGAP000950-PA [Anopheles gambiae str. PEST] |
2e-79 |
| InterPro |
IPR000244 |
Ribosomal protein L9 |
|
| InterPro |
IPR009027 |
Ribosomal protein L9/RNase H1, N-terminal |
|
| InterPro |
IPR020070 |
Ribosomal protein L9, N-terminal |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF11436.3 |
Protein of unknown function (DUF3199) |
0.037 |
| Pfam |
PF01281.14 |
Ribosomal protein L9, N-terminal domain |
1.3e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB19014-PA |
| B. mori |
BGIBMGA004977-TA |
| H. melpomene |
HMEL004729-PA |
| S. invicta |
SI2.2.0_04929 |
| H. sapiens |
ENSP00000357823 |
| N. vitripennis |
NV16104-PA |
| A. gambiae |
AGAP000950 |
| T. castaneum |
TC010194 |
| P. humanus |
PHUM459510-PA |
| P. vanderplanki |
Pv.05619 |
| A. aegypti |
AAEL011390 |
| D. plexippus |
DPOGS202305PA |
| C. quinquefasciatus |
CPIJ013282 |
| D. melanogaster |
FBgn0038319 |
| H. sapiens |
ENSP00000357822 |
| M. musculus |
ENSMUSG00000028140 |