MidgeBase gene description page [Pn.05164]
Outline
| Gene ID | Pn.05164 |
| Type | Protein coding gene |
| Scaffold | PnScaf4435 |
| Start | 49040 |
| End | 53272 |
| Direction | - |
Sequence
Transcript: 2469 (bp)
ATGAATGAGAATTCGACGTTCTTTTATTCAACGCAAATCAACGCTAATACCACTCAAAATCCGCTAATCAACTTCACGACAAATGATTCGAATGACTTTAAGACCGTGCCATGGTGGTGTTCGTGCTCGAGCGAACTCGAAGATTTGGAGGGAGAGGTCGAATGCCACTGCGAAGGAACGCCACTGAAAATTATTCCGCAGAATCTACTGAACTTTACAAGACTGTCCGTAGCAAATACGAAATTGAAAGTATTAAGGGAAGCTGAATTGAGAAAATATGCAGCACTCATAAAAGATATAGTTTTAATAAACCTCAGTGAGCTTGAAAGAATTGAGACTGAAGCTTTCAAAAATACCCGTCAATTAAGGACTCTATACATTTCACGAGCCCCGAAGCTTCGTTATGTTGCCAGAGAAACGTTTCAATACGTTTCACACTCATTTAAGATACTGCGTATCATCCATTCGGGGTTGCTCGAAATACCAGACCTGAGTTATTTGCAAACGAATGCTAGGATATTATTGCAACTAGATTTCGAGGGAAACCTAATCAGCGAGATTTTGGCGAACTCTGTTCGCATCCGAACAGAACAATTAATAATCGATAACAATGTTCTTGTAAGCGTTCATCGTGCAGCGTTTAATGGATCCGAAATCGGAAAATTAAGCCTAAAGGGTAACACAAAGTTACGCATTCTGCATGAGCGTGCATTCGAAGGAATAAAAAATATCCAGGAGCTGGATTTGTCTAGTACATTTATAGAGAGTCTGCCAACTCTCGGACTAGATAAGCTCGAAGTTCTCCGCATTCAAAATACTCGTTCACTGAAGCACATTCCGTCAGTGTACAACTTCCAGAATCTCGAGAAAGCTTGGCTCACTCATCCATTTCACTGTTGTGCATTCAAATTTCCCCAGCGTCACGATCCTTCAAGGCATCTTCGACACTTGCAGTTAATTGAGAGCTTCAAGAATGAGTGCAAGCTTAAGGGGTATCAATCAACTTTAGCAGCGGCAGCAGTAGTATCGGCGGTGTCTTCGTCTGAAGCCTTGAGCTCATTGAACAATAACAACTTGAATGGAGATTCTGAGCTTATGCCGCGGATGGAGAGACGACGAAGGAGGTCGACGTATTTGACAAAGACCAGCGATGTGATGAATAACAAGACGAGAGAGGTGTCGATTTACAATAATGAAGAGGATATAGTGCTCGACGAAGACTACTACTTGGATCCCGAGGGTGAATTTCATGAACCGACAATTCTAAAAAATGAAACGCTCGAGGCCATGTGCGGAAACATATCGCTAAAAGTGAGAGACGTTCAGTGTTTTCCGATGCCAGATGCGCTGAATCCTTGCGAGGACGTTATGGGAAGCAGCTGGCTGCGGGCGTCTGTATGGATAGTTGTTTCTCTGGCAGTTATCGGAAACGTGGCAGTATTAGTTGTTTTGTTGTCTAATCAATCGGACTTTACAGTGCCGAAGTTCTTGATGTGCAATTTGGCTTTAGCTGATTTCTGCATGGGAATCTATCTCCTGCTAATTGCGTCCATTGATCTGCACTCGATGGGTGAATACTTTAATTTCGCATTCGATTGGCAGTATGGAATGGGTTGCAAGACTGCTGGATGGCTCACCGTATTTGCTGGTCATCTTTCAATATTTACTCTTACAATCATTACGGTGGAGCGGTGGTTTGCCATAACGCATGCAATATATCTGAATAAACGATTGAAGCACCGCAACGCAATCTACATCATGGTTTGCGGGTGGTTTTACTCCATAATTATGGCGATAATGCCACTTTACGGCATTTCCAACTATTCATCCACAAGCATTTGTCTACCGATGGAGGCAAAAGACAACGCCGATGTGATATATTTGATAACAGTATTGGCAGTAAATGGCTTAGGATTTTTCATCGTAGTCATTTGCTATGCTCAAATTTACTTTTCTCTGGGGAAAGAAACCAGGCAACGTGGAATCGGAAGCGGGCGGTCGGAGATGACTGTCGCTAAGAAAATGGCACTTTTGGTCTTTACAAATTTCGCGTGCTGGGCACCTATAGCATTTTTCGGACTAACTGCTCTTGCGGGTTTTCCTCTGATAAACGTTACAAAGTCAAAAATCCTCCTCGTATTTTTCTATCCAATCAATTCCTGTGCAAATCCCTATCTTTATGCAATTCTTACTTCACAATATCGACGAGATTTGTTCCAATTACTATCGAAATTCGGAATATGTACGCAGCGTGCTCAAAAGTACCGAATGAATTACAGTAATCCCACTCACACGATTCCTCTGAATATGCTATCGAGTACTCGAAATTCAAACTCAATGAACTTCCAGTATCGACGTGCAAACAGCAACCCAAAGGCCTCAAACACAATAGAACAGCCGCTTGTTGCCGATCAACATGTAGCGACCTATACAAACGGAAAAATTGATGTTAATTTATGTGAAGATACT
Protein: 823 (aa)
MNENSTFFYSTQINANTTQNPLINFTTNDSNDFKTVPWWCSCSSELEDLEGEVECHCEGTPLKIIPQNLLNFTRLSVANTKLKVLREAELRKYAALIKDIVLINLSELERIETEAFKNTRQLRTLYISRAPKLRYVARETFQYVSHSFKILRIIHSGLLEIPDLSYLQTNARILLQLDFEGNLISEILANSVRIRTEQLIIDNNVLVSVHRAAFNGSEIGKLSLKGNTKLRILHERAFEGIKNIQELDLSSTFIESLPTLGLDKLEVLRIQNTRSLKHIPSVYNFQNLEKAWLTHPFHCCAFKFPQRHDPSRHLRHLQLIESFKNECKLKGYQSTLAAAAVVSAVSSSEALSSLNNNNLNGDSELMPRMERRRRRSTYLTKTSDVMNNKTREVSIYNNEEDIVLDEDYYLDPEGEFHEPTILKNETLEAMCGNISLKVRDVQCFPMPDALNPCEDVMGSSWLRASVWIVVSLAVIGNVAVLVVLLSNQSDFTVPKFLMCNLALADFCMGIYLLLIASIDLHSMGEYFNFAFDWQYGMGCKTAGWLTVFAGHLSIFTLTIITVERWFAITHAIYLNKRLKHRNAIYIMVCGWFYSIIMAIMPLYGISNYSSTSICLPMEAKDNADVIYLITVLAVNGLGFFIVVICYAQIYFSLGKETRQRGIGSGRSEMTVAKKMALLVFTNFACWAPIAFFGLTALAGFPLINVTKSKILLVFFYPINSCANPYLYAILTSQYRRDLFQLLSKFGICTQRAQKYRMNYSNPTHTIPLNMLSSTRNSNSMNFQYRRANSNPKASNTIEQPLVADQHVATYTNGKIDVNLCEDT
| Type | Start | End | Length |
| CDS |
49043 |
49477 |
435 |
| CDS |
49548 |
49690 |
143 |
| CDS |
49772 |
49827 |
56 |
| CDS |
50167 |
50395 |
229 |
| CDS |
50468 |
50668 |
201 |
| CDS |
50734 |
50828 |
95 |
| CDS |
50903 |
51354 |
452 |
| CDS |
51413 |
51530 |
118 |
| CDS |
51599 |
51673 |
75 |
| CDS |
51777 |
51845 |
69 |
| CDS |
51918 |
51983 |
66 |
| CDS |
52148 |
52225 |
78 |
| CDS |
52554 |
52631 |
78 |
| CDS |
52711 |
52785 |
75 |
| CDS |
52907 |
53055 |
149 |
| CDS |
53123 |
53272 |
150 |
| intron |
49478 |
49547 |
70 |
| intron |
49691 |
49771 |
81 |
| intron |
49828 |
50166 |
339 |
| intron |
50396 |
50467 |
72 |
| intron |
50669 |
50733 |
65 |
| intron |
50829 |
50902 |
74 |
| intron |
51355 |
51412 |
58 |
| intron |
51531 |
51598 |
68 |
| intron |
51674 |
51776 |
103 |
| intron |
51846 |
51917 |
72 |
| intron |
51984 |
52147 |
164 |
| intron |
52226 |
52553 |
328 |
| intron |
52632 |
52710 |
79 |
| intron |
52786 |
52906 |
121 |
| intron |
53056 |
53122 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309589 |
AGAP004035-PA [Anopheles gambiae str. PEST] gb|EAA05376.3| AGAP004035-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR002131 |
Glycoprotein hormone receptor |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0016500 |
protein-hormone receptor activity |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
4.4e-14 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
0.072 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
1.2 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
4.9e-38 |
| Pfam |
PF13306.1 |
Leucine rich repeats (6 copies) |
8.1e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000294954 |
| A. aegypti |
AAEL004399 |
| P. vanderplanki |
Pv.07556 |
| H. sapiens |
ENSP00000384708 |
| P. vanderplanki |
Pv.06926 |
| H. sapiens |
ENSP00000385847 |
| H. sapiens |
ENSP00000298171 |
| D. plexippus |
DPOGS200833PA |
| C. quinquefasciatus |
CPIJ007712 |
| H. sapiens |
ENSP00000306780 |
| D. melanogaster |
FBgn0016650 |
| M. musculus |
ENSMUSG00000032937 |
| H. sapiens |
ENSP00000441235 |
| T. castaneum |
TC009575 |
| H. sapiens |
ENSP00000344301 |
| H. sapiens |
ENSP00000385406 |
| P. humanus |
PHUM452330-PA |
| H. sapiens |
ENSP00000444172 |
| M. musculus |
ENSMUSG00000024107 |
| A. gambiae |
AGAP004035 |
| T. castaneum |
TC009127 |
| H. sapiens |
ENSP00000333908 |
| H. melpomene |
HMEL012637-PA |
| H. sapiens |
ENSP00000415504 |
| B. mori |
BGIBMGA009887-TA |
| H. sapiens |
ENSP00000386033 |