MidgeBase gene description page [Pn.05116]
Outline
| Gene ID | Pn.05116 |
| Type | Protein coding gene |
| Scaffold | PnScaf4421 |
| Start | 356 |
| End | 4791 |
| Direction | - |
Sequence
Transcript: 2313 (bp)
ATGCCAAAGAAAGTGACGAAGGAGCTCTCTTGCGACCGGACGCTCATCGTCCGGATGGTTCTTGTCGGTCTGGTGACGCTCGTCGCCATTCTTGCGCCAATCATTCACTTTCTCGTCACATCGTCCGACGTTCCTTCGACAGCAACCACAGCAGTCGACGAGTCCTCGACACTGCCGCCGCCGAGCTATCCGGAGCTTGTTACGAGGAGCGAGTGGGGCGCTCTGCCGCCCAGCAGTGCCTTGAAGCGACTGCGCTCGCCTGTGAGCCGAATCATCGTGGCTCAGACGGGAGGAAGCTCGTGCAGTGACGAGGTGGAGTGTAAGGTCAGAGTCAAAGCCATTCAGGCCGAAAATCCGCAGCTCGACGACATCGCCTTCAACTTTCTCGTCGGCGGCGACGGCCGAGTGTACGAGGGTCGAGGTTTTGAGTTCGAGGGGCAGCACACGACGAACTTTGAGGCGACCGAGTTCAACAGCATCGGCATTTGCGTGGCCTTCATCGGAAATTACGCGAGCGAGCCGCCAAGCATCGAGCAAATGACTGTCTTTAGGGAATTTGTCGAGTTTTACGAGAAGAGCGAGAGAATTGCTGCAAATCACAAGATTTTTTCGCAAGACGATTTGACTTTCAATCCGGTGCAGGCGACGCAGCTCAACCGTGCTGTTGGCTCGTTTTACAACTTCTATCCACTTCAAAGAGTTTTCCGTCGCGAAGAATGGGGCGCGACGAAGGCAAATCGCAGTTCCTTTGAATTCGGAAGGAGCATGGACTGGGTTCTTATCTCGCACACAGCTAGCATTGAGTGCGACGATTTCACCAACTGCTCAACTTATGTGCGCAACCTTCAAATCTACAGCATCAGCATCGGCTTTGCTGACATCGGTTTCAACTTCTTCGTCGGCGGAGACGGCCTCGTGTTCGAAGGTCGCGGCTGGGATGCCATGGGCGCGCACACAGTGAATTTCAACGACCTCGCGATTGGCGTGGCTGCGATCGGAAATTTCAATGAGGTGGAGCCGTCGCAGGGCATGCTCGAGGCCTTCGTGCGGCTGATGGAGGAGGGCGAGGTGCTCGGCAAGCTGACGGTCAGCTTCGAGGTGAGCGGGCGGCAGGAGACGCCGGGCGGTTCGGGGCCGGGTGAGGCTTTCATGAAGCACTTGCGCCAGTGGAGTCGCTACAAGTTCAAACATCTGCCGACAATTTCGCCGGGTGTAACGACTTCAGCTGCGCCAACATGGGCAACCACAACCACGACAACCGAGGCCTTCACGATGCCGCCAAATGCCTCGCATTTTGATCTTTTGGTGCCGAGAGAGGCGTGGAATGCGAACGAACCGCAGGCTGATGTGAAGAGACTGCACCTGCCCATCAAACGGATCATCGTGGCGCAGACTGGTGGCGACTCGTGCGCCACTGAGGATGCGTGCAAAACCCGAGTGAAAGCCATTCAGGCCGAAAATCCGCAGCTCGACGACATCGCCTTCAACTTTCTCGTTGGCGGCGACGGCCGAGTGTACGAGGGTCGAGGTTTTGAGTTCGAGGGGCAGCACACGGCGAACTTTGAGGCGACCGAGTTCAACAGCATCGGCATTTGCGTGGCCTTCATCGGAAATTACACAAGCGAAGCTCCAAGTGATGAGCAAATAACTGTGTTTGAGAATTTCATCGAGTTTTATCGACTTTTGGGGGTCATCGGGCAGGGTTTTATCGTCGTGCTGCAGAATGACCTGGTTTATACCCGAACAAGAGCCAATGCACTGAATGAGGCCATAAAAGGTCGCATCGGCAATTATGAGCTTCAGAAAATTTACCGGCGCGAAGAATGGAACGCCAGACAGAGAAAACCTAACGCTCCATCCGCCTTCAACCGCACAATGGACTGGGTGATGCTCTCGCACACTGCAGCCAGCCAATGTGGTGACGCGAACATGTGCGCGGGCGAGATGAAGCGCTGGCAGGACTACAACATGGACGTCAACAGCTGGGACGACATTGGCTTCAACTTTTTTGTGGGCGGCGACGGTCTCGTGTTCGAGGGCCGCGGCTGGGACATTAACGGTGCGCACACGAAGAACTACAACGCAATCACAGTGGGTGTGGCGGTGATTGGAAACTTTGATCGAACTGAGCCGCCTGAAGGCATGCTCGATGCAGTTCTGAGGCTAATGGAGGACGGCAAGGCGTTGGGGAAGCTGACCGGAGACTACACGGTCAGTGGACGGCAAGAGACGCCAGGCGGTGCCGGTCCGGGCGATGCTTTCATGAGGCATGTGAAGGCTTGGTGCCAGCACAAATACCGGGCGATGCAGTGC
Protein: 771 (aa)
MPKKVTKELSCDRTLIVRMVLVGLVTLVAILAPIIHFLVTSSDVPSTATTAVDESSTLPPPSYPELVTRSEWGALPPSSALKRLRSPVSRIIVAQTGGSSCSDEVECKVRVKAIQAENPQLDDIAFNFLVGGDGRVYEGRGFEFEGQHTTNFEATEFNSIGICVAFIGNYASEPPSIEQMTVFREFVEFYEKSERIAANHKIFSQDDLTFNPVQATQLNRAVGSFYNFYPLQRVFRREEWGATKANRSSFEFGRSMDWVLISHTASIECDDFTNCSTYVRNLQIYSISIGFADIGFNFFVGGDGLVFEGRGWDAMGAHTVNFNDLAIGVAAIGNFNEVEPSQGMLEAFVRLMEEGEVLGKLTVSFEVSGRQETPGGSGPGEAFMKHLRQWSRYKFKHLPTISPGVTTSAAPTWATTTTTTEAFTMPPNASHFDLLVPREAWNANEPQADVKRLHLPIKRIIVAQTGGDSCATEDACKTRVKAIQAENPQLDDIAFNFLVGGDGRVYEGRGFEFEGQHTANFEATEFNSIGICVAFIGNYTSEAPSDEQITVFENFIEFYRLLGVIGQGFIVVLQNDLVYTRTRANALNEAIKGRIGNYELQKIYRREEWNARQRKPNAPSAFNRTMDWVMLSHTAASQCGDANMCAGEMKRWQDYNMDVNSWDDIGFNFFVGGDGLVFEGRGWDINGAHTKNYNAITVGVAVIGNFDRTEPPEGMLDAVLRLMEDGKALGKLTGDYTVSGRQETPGGAGPGDAFMRHVKAWCQHKYRAMQC
| Type | Start | End | Length |
| CDS |
359 |
648 |
290 |
| CDS |
712 |
808 |
97 |
| CDS |
1128 |
1255 |
128 |
| CDS |
1485 |
1863 |
379 |
| CDS |
2072 |
2580 |
509 |
| CDS |
2642 |
2735 |
94 |
| CDS |
3116 |
3240 |
125 |
| CDS |
3708 |
4086 |
379 |
| CDS |
4480 |
4791 |
312 |
| intron |
649 |
711 |
63 |
| intron |
809 |
1127 |
319 |
| intron |
1256 |
1484 |
229 |
| intron |
1864 |
2071 |
208 |
| intron |
2581 |
2641 |
61 |
| intron |
2736 |
3115 |
380 |
| intron |
3241 |
3707 |
467 |
| intron |
4087 |
4479 |
393 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002069134 |
GK23822 [Drosophila willistoni] gb|EDW80120.1| GK23822 [Drosophila willistoni] |
1e-59 |
| InterPro |
IPR015510 |
Peptidoglycan recognition protein |
|
| InterPro |
IPR002502 |
N-acetylmuramoyl-L-alanine amidase domain |
|
| InterPro |
IPR006619 |
Peptidoglycan recognition protein family domain, metazoa/bacteria |
|
| Gene Ontology(BP) |
GO:0009253 |
peptidoglycan catabolic process |
|
| Gene Ontology(MF) |
GO:0008745 |
N-acetylmuramoyl-L-alanine amidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF01510.20 |
N-acetylmuramoyl-L-alanine amidase |
2.1e-59 |
| Pfam |
PF00556.15 |
Antenna complex alpha/beta subunit |
0.73 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05101 |