MidgeBase gene description page [Pn.05104]
Outline
| Gene ID | Pn.05104 |
| Type | Protein coding gene |
| Scaffold | PnScaf4379 |
| Start | 22029 |
| End | 23668 |
| Direction | + |
Sequence
Transcript: 1569 (bp)
ATGAGTAATTTTAAGAAAGTTACAGTCCAAAATTTCACAAAAGCCTCTGTGGTGACGAGTGAGGAGTGCAAATATTGGAAGCAATTTGGATCTCCAGTCTTCATAAAAGAGTTTGGCGCAATAGACTACATTGATTTTAGTCCAGTCGAGCCCTATAACTTTGCAGCAACATGTTCCCTTCGCGTTCAAATCTACAATCCTCTCACAAAGCTAGTTTTGAAGAACATCACCACCTTCCAACAGGAGGCTTTCGGTGCAACATTCAGGAAAGACGGAAAGCTGATTGTGGCCGGCGATGCTGAAGGAAAAGTCCGATTATTTGATGCCAACACAAAGACAATATTGAGAATCTTCTCGGGCCATCGAGCAGCCGTGCACAGGACACATTTTGTGTCAGACCTTCACCATATTGCGAGCTTCTCAGACGACAAGACAGTGAAGCTCTGGGATGTTGGAACGGAGAGAATAATGAGCACATTCCGCGAGCACAACGACTACGTGAGAGCCGGTGCAGTGAACGTCACGAGTCCACATACACTCCTAAGCGGAGGCTACGACCACATCGTCAAAATGTACGACACCCGCTCAGAGAAGTCGGTGCTGTCGATCAACCACGAGAGTCCCGTTGAGTCGCTCATCTTCCTCCCGTCTGGCGGAATTTTCATTTCAGCCGGAGGAAACGACATTAAGTTTTGGGATGCGGTGGCTGGCGGTCGACATTTGGGCACAATTTCGCAGCACACGAAGACAGTGACGAGCCTCGCACTCGGTCACGACGGTCGTCACCTCGTCAGTGGAAGCCTCGACCGACACGTGAAGTTCTTCAACACCGTCAACTACCAGATGATTCACAACATCAACTACACCAGCTCCATTCTCAGCGTTGGCGTGGCGAGGGACGGAAACACGCTGGCAGTTGGTCAGGTCGACGGAACGCTGGCGATCCACCGACGAGAGCAGAAATTCAATGAGGTGAAATCTGAGCGAGTCGAGAAGGAGAAGAGAAGACGAGAGTGGAACTACAAACTCGCCGAGGAAGTAATCCCGAAGCCAGAACGCAGTGACTTGAAGAACTACGACGTGAGTCTGAAAAAGTTTGAATATTCGCGAGCGCTAGACCAAGTGATGAGTCGCAATTGTGTCACGAAAACTCCCGAAGTAACTGTCGCCATCATCCACGAGCTCATCCGGAGAAACGGACTCAAGCAGGCGTTTTCAAATCGAGAGCAGGACAGTCTCGCCAAAATCATTACGTTCTTCAACAAATTCATCGGCGACGGTCGCTTTACGAGAATTCTGATAGACGCAATCAACATCTTTTTCGATGTGTACGAGCCGCAGTTTATGTCATTGGCACCGGAGGTTCAACGATTGATTGTCGAATTGAATCGACGCGTTCAAGTGGAAGAGAACATGACATTGGAATTTCTTAAGTTGCAAGGTGCTCTAGACATTATAACAAACGCCGCTGAAATTGTTACCGAACAGCAGAACGAGACAATTGACTTGACAGCGACATCAAAAATGCAGCCAAGTGCCGACGCAATGAAGGCGACTGTAATAAACGTG
Protein: 523 (aa)
MSNFKKVTVQNFTKASVVTSEECKYWKQFGSPVFIKEFGAIDYIDFSPVEPYNFAATCSLRVQIYNPLTKLVLKNITTFQQEAFGATFRKDGKLIVAGDAEGKVRLFDANTKTILRIFSGHRAAVHRTHFVSDLHHIASFSDDKTVKLWDVGTERIMSTFREHNDYVRAGAVNVTSPHTLLSGGYDHIVKMYDTRSEKSVLSINHESPVESLIFLPSGGIFISAGGNDIKFWDAVAGGRHLGTISQHTKTVTSLALGHDGRHLVSGSLDRHVKFFNTVNYQMIHNINYTSSILSVGVARDGNTLAVGQVDGTLAIHRREQKFNEVKSERVEKEKRRREWNYKLAEEVIPKPERSDLKNYDVSLKKFEYSRALDQVMSRNCVTKTPEVTVAIIHELIRRNGLKQAFSNREQDSLAKIITFFNKFIGDGRFTRILIDAINIFFDVYEPQFMSLAPEVQRLIVELNRRVQVEENMTLEFLKLQGALDIITNAAEIVTEQQNETIDLTATSKMQPSADAMKATVINV
| Type | Start | End | Length |
| CDS |
22029 |
22118 |
90 |
| CDS |
22187 |
23665 |
1479 |
| intron |
22119 |
22186 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656443 |
U3 small nucleolar RNA-associated protein, putative [Aedes aegypti] gb|EAT48545.1| U3 small nucleolar RNA-associated protein, putative [Aedes aegypti] |
1e-152 |
| InterPro |
IPR018983 |
U3 small nucleolar RNA-associated protein 15, C-terminal |
|
| InterPro |
IPR017986 |
WD40-repeat-containing domain |
|
| InterPro |
IPR015943 |
WD40/YVTN repeat-like-containing domain |
|
| InterPro |
IPR001680 |
WD40 repeat |
|
| Gene Ontology(BP) |
GO:0006364 |
rRNA processing |
|
| Gene Ontology(CC) |
GO:0005730 |
nucleolus |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13570.1 |
YWTD domain |
0.3 |
| Pfam |
PF00400.27 |
WD domain, G-beta repeat |
1.4e-28 |
| Pfam |
PF09384.5 |
UTP15 C terminal |
1.5e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS202136PA |
| P. humanus |
PHUM299080-PA |
| M. musculus |
ENSMUSG00000041747 |
| H. sapiens |
ENSP00000424609 |
| H. sapiens |
ENSP00000421669 |
| A. aegypti |
AAEL000422 |
| H. sapiens |
ENSP00000296792 |
| A. gambiae |
AGAP002088 |
| T. castaneum |
TC004458 |
| S. invicta |
SI2.2.0_00608 |
| P. vanderplanki |
Pv.12578 |
| H. sapiens |
ENSP00000440796 |
| P. vanderplanki |
Pv.10173 |
| C. quinquefasciatus |
CPIJ002854 |
| A. mellifera |
GB12723-PA |
| D. melanogaster |
FBgn0023527 |
| N. vitripennis |
NV11267-PA |
| B. mori |
BGIBMGA001509-TA |