MidgeBase gene description page [Pn.05062]
Outline
| Gene ID | Pn.05062 |
| Type | Protein coding gene |
| Scaffold | PnScaf4348 |
| Start | 44729 |
| End | 50049 |
| Direction | + |
Sequence
Transcript: 1248 (bp)
ATGTCTGATCAGCACCGTGGAGGTGCATGGGGCGCAAGGGAGGATGCAGTGTGGTGGCCGGGAGCAATCACAGCTGATCAGAGCAATTTACATCATCAACAAATCCTCAATCAGCATCATCAGCAGAATCACATGCAGCAACAGCAGCAGCAACAGCAGCAACAACAGATACATCAAGTTGTAGTGCAACAGCAGACGCAGAACAATAGTACGACTTCCAGTGCAGCCTCACAACAGCTCTTCTCCTACAAAATGGCTAGTAGTTTTCCATCAAACGTGGCAACGTCAAATGCAGCTGCGTATGACTATCGTCTAGGAATGGGCAACACGCAGCCGATGGTAACAACGGCGCCGGGCACCCAATGGTGGTACACTGCAGCCGGCCAGAATGCACTAGAGAATTTGCAGCAAGCTCAACAGCAACAACAGCAGCAGCATCATCAAATCACTCAGCAAACGCAATCTCAACATCAATCTCAAAACATACACAATGTACATTCAAATCAATCCTCGAATCAAACCCATGTACAACAGAATGCAAATCAGAATAATCAGATTGCTGCGAAGATGAATAGAGGAAAGGGCGCGGATGCGAAGCCGCGTGGTCGAATGACGGCATACGCTTTCTTTGTTCAGACTTGTCGCGAGGAGCACAAGAAGAAGCATCCGGAAGAGTCTGTCATCTTTGCAGAGTTTTCTAGGAAATGTGCAGAACGATGGAAGACAATGCTAGACAAAGAGAAGAAACGCTTTCACGAGATGGCAGAAAAAGACAAGCAGCGATATGACATGGAGATGTCGAATTATGTTCCACCAAAAGGAGTCGTCGTCGGACGCGGCAAGAAGCGAAAACACCAGAAAGACCCAAATGCACCAAAGCGATCGCTGTCGGCGTTCTTCTGGTTCTGCCACGACGAGAGGAATAAGGTTAAGGCACTTAATCCCGAATATGGCGTAGGCGACATTGCCAAGGAACTCGGCCGGAAGTGGTCGGACTGCGATCCGGAGGTTAAGAGCAAATATGAGGCTATGGCTGACAAGGACAAGCAGAGATATGAGAAGGAAATGACGGAATATAAACTCAAGTGTAGAAATATTCAGCAGGGCATTATTACACCTAATCATGTACAGCAACAACCGACTCAAATTATGCAACAGATGCAGCACCAGCAGCATCAGCAGCAACAGCAGCAGCAGCACCACGACGACGACTCGGGCGATGAGGACGGCGACGGCGATGGTGAGGAT
Protein: 416 (aa)
MSDQHRGGAWGAREDAVWWPGAITADQSNLHHQQILNQHHQQNHMQQQQQQQQQQQIHQVVVQQQTQNNSTTSSAASQQLFSYKMASSFPSNVATSNAAAYDYRLGMGNTQPMVTTAPGTQWWYTAAGQNALENLQQAQQQQQQQHHQITQQTQSQHQSQNIHNVHSNQSSNQTHVQQNANQNNQIAAKMNRGKGADAKPRGRMTAYAFFVQTCREEHKKKHPEESVIFAEFSRKCAERWKTMLDKEKKRFHEMAEKDKQRYDMEMSNYVPPKGVVVGRGKKRKHQKDPNAPKRSLSAFFWFCHDERNKVKALNPEYGVGDIAKELGRKWSDCDPEVKSKYEAMADKDKQRYEKEMTEYKLKCRNIQQGIITPNHVQQQPTQIMQQMQHQQHQQQQQQQHHDDDSGDEDGDGDGED
| Type | Start | End | Length |
| CDS |
44729 |
45241 |
513 |
| CDS |
47008 |
47217 |
210 |
| CDS |
49431 |
49769 |
339 |
| CDS |
49861 |
50046 |
186 |
| intron |
45242 |
47007 |
1766 |
| intron |
47218 |
49430 |
2213 |
| intron |
49770 |
49860 |
91 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_311155 |
AGAP000005-PA [Anopheles gambiae str. PEST] gb|EAA06432.5| AGAP000005-PA [Anopheles gambiae str. PEST] |
1e-119 |
| InterPro |
IPR009071 |
High mobility group, superfamily |
|
| InterPro |
IPR017967 |
HMG box A DNA-binding domain, conserved site |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF10893.3 |
Protein of unknown function (DUF2724) |
0.072 |
| Pfam |
PF09770.4 |
Topoisomerase II-associated protein PAT1 |
0.092 |
| Pfam |
PF00505.14 |
HMG (high mobility group) box |
1.3e-36 |
| Pfam |
PF09011.5 |
Domain of unknown function (DUF1898) |
1.7e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV15664-PA |
| M. musculus |
ENSMUSG00000066551 |
| H. sapiens |
ENSP00000369904 |
| H. sapiens |
ENSP00000343040 |
| A. gambiae |
AGAP000005 |
| B. mori |
BGIBMGA001132-TA |
| H. sapiens |
ENSP00000345347 |
| H. sapiens |
ENSP00000384678 |
| H. melpomene |
HMEL007340-PA |
| D. plexippus |
DPOGS205620PA |
| H. sapiens |
ENSP00000382417 |
| H. sapiens |
ENSP00000411269 |
| S. invicta |
SI2.2.0_09636 |
| P. vanderplanki |
Pv.11497 |
| C. quinquefasciatus |
CPIJ014043 |
| P. humanus |
PHUM006290-PA |
| H. sapiens |
ENSP00000382412 |
| A. mellifera |
GB13747-PA |
| T. castaneum |
TC007692 |
| D. melanogaster |
FBgn0011764 |
| A. aegypti |
AAEL011380 |