MidgeBase gene description page [Pn.05022]
Outline
| Gene ID | Pn.05022 |
| Type | Protein coding gene |
| Scaffold | PnScaf4316 |
| Start | 1667 |
| End | 26214 |
| Direction | + |
Sequence
Transcript: 558 (bp)
ATGGAGCATACGTACTACAGTTCGCTAGTCAATCACCTAAAGGTTCTCGGACAGACAATCATGGGACGGAGAAAAAGTTTACAACAAAAACCCACAAATTTCTCAGAGGATGAGGTGAAAGATTTGCGAACAGCTTTTGACTTGCTAGACAGAGATCAAGATGGCATGGTGACACCCACAGAACTGCAGTTTATGCTGAGAAATCTGGGCATTCATGTGAGCGATGAGCTGATCGACCAGCTCATGAAGGAAGCCAGCAAAACCGGAAACGGATTGATAGACGAGACAGAGTTTTTGCAGTGGATTGGAAGGATACAGGCACTGAGAGAAGACAGCACACCCACAGCCGAGGATGACGATCTCACGCAAGACCTTGTGGCTGCTTTCAGGGTGTTTGATAGAGACAATAACGGTTACATAACACGTGATGAACTCCAGCGAGCCATGCAAATGATTGGCGAGGAAGTGTCCGAGGGACAACTGAATGACATGCTCGCCCTGGCTGATCTTGACAAAGATGGTAGAATTAATTATGAAGAATTTGCACGATTGCTGTTG
Protein: 186 (aa)
MEHTYYSSLVNHLKVLGQTIMGRRKSLQQKPTNFSEDEVKDLRTAFDLLDRDQDGMVTPTELQFMLRNLGIHVSDELIDQLMKEASKTGNGLIDETEFLQWIGRIQALREDSTPTAEDDDLTQDLVAAFRVFDRDNNGYITRDELQRAMQMIGEEVSEGQLNDMLALADLDKDGRINYEEFARLLL
| Type | Start | End | Length |
| CDS |
1667 |
1708 |
42 |
| CDS |
5551 |
5583 |
33 |
| CDS |
5707 |
5752 |
46 |
| CDS |
21649 |
21792 |
144 |
| CDS |
25736 |
25859 |
124 |
| CDS |
25973 |
26121 |
149 |
| CDS |
26192 |
26211 |
20 |
| intron |
1709 |
5550 |
3842 |
| intron |
5584 |
5706 |
123 |
| intron |
5753 |
21648 |
15896 |
| intron |
21793 |
25735 |
3943 |
| intron |
25860 |
25972 |
113 |
| intron |
26122 |
26191 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315386 |
AGAP005378-PC [Anopheles gambiae str. PEST] gb|EAA44021.4| AGAP005378-PC [Anopheles gambiae str. PEST] |
2e-65 |
| InterPro |
IPR018247 |
EF-Hand 1, calcium-binding site |
|
| InterPro |
IPR018249 |
EF-HAND 2 |
|
| InterPro |
IPR011992 |
EF-hand-like domain |
|
| InterPro |
IPR002048 |
Calcium-binding EF-hand |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF03672.8 |
Uncharacterised protein family (UPF0154) |
0.00023 |
| Pfam |
PF11848.3 |
Domain of unknown function (DUF3368) |
0.12 |
| Pfam |
PF12763.2 |
Cytoskeletal-regulatory complex EF hand |
1.1e-05 |
| Pfam |
PF13499.1 |
EF-hand domain pair |
2.6e-29 |
| Pfam |
PF10591.4 |
Secreted protein acidic and rich in cysteine Ca binding region |
2.1e-06 |
| Pfam |
PF08726.5 |
Ca2+ insensitive EF hand |
0.0054 |
| Pfam |
PF05042.8 |
Caleosin related protein |
0.00052 |
| Pfam |
PF00036.27 |
EF hand |
3.4e-28 |
| Pfam |
PF13202.1 |
EF hand |
4.7e-19 |
| Pfam |
PF13833.1 |
EF-hand domain pair |
6.8e-24 |
| Pfam |
PF13405.1 |
EF-hand domain |
7.5e-24 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0004910 |
| C. quinquefasciatus |
CPIJ015812 |
| P. vanderplanki |
Pv.01476 |
| D. plexippus |
DPOGS206469PA |
| T. castaneum |
TC012785 |
| A. aegypti |
AAEL012513 |
| A. gambiae |
AGAP005378 |
| H. melpomene |
HMEL012949-PA |
| B. mori |
BGIBMGA005345-TA |