MidgeBase gene description page [Pn.05018]
Outline
| Gene ID | Pn.05018 |
| Type | Protein coding gene |
| Scaffold | PnScaf4313 |
| Start | 19439 |
| End | 20917 |
| Direction | - |
Sequence
Transcript: 969 (bp)
ATGCTAATCATTGTTTACGAACGAAATTCTACGTTCATTCACATCACTGGCCGGAGAATTTTCACGAGAAGCCCAACCGACTCAGACGACTCGACTTTGAGCGTACTCGCTCTCAATCTCATCCTCACAGTCGTCGTTGCGAGCGCGCTGAGAGTTGTCGAGCAATTAAGTCTAACACTGGAGCCGAGTATGGAGAACTTGGAGAAATATCTCGAGGACTACGTGAGTGAGAAGCCTTTCGCTCTCCTCCTCGACTACGATGGAACGCTCGCCGCCATCCAACCGCACCCGAATCTCACCTACATGACCGACTACACGAAGGAGGCGCTGCTCAACATCTCGTCGCGCTCCAACATTTTCCTCTCGATCATCTCGGGCAGAGGTGTCGATGATGTGCGAAGGAAGGTCGACATCGATGGCATTATCTATGCGGGCAATCACGGCCTCGAGATTCTATATCCCAATGGGACGCGCTACATTCACGAGGTCCCGGCCGATGTCAGGGACAATTTCACCGCGATGGTCGCCTCTTTGGAGAAGATCAACCGAGACGGCAGTTGGGTGGAGAACAAAAAGTTCTCGGTGACCTTCCACTACCGGGCCGTGCCGGAAAAGGACTACGACAAGATCCGGGACGAGGCGAAGGAGATCATCGAGAGACACGGCTATCGAGCGAATCAGGCGCACTGCGCGATCGAAGCTAAGCCGCCGGTCGTCTGGCACAAGGGAAAGGCGGCCGAGTACATTCTCGACCACTCGTTCGGAAAGGACTGGAGAGAAAATATTCAAGTTTTGTTTGCTGGTGATGATACGACCGATGAAGATGTTTTTGAGCTGCTTCAAGGCGTCGGCATTACGTTCAGAGTCACGCAGGATCCGAATGTTGTGACAAAGGCGACCTACAAAGTGCCCTCGACCGATTCTGTCACCAAGATATTGCAGTGGGTCGACAAAAAGTTCACGAAGAAA
Protein: 323 (aa)
MLIIVYERNSTFIHITGRRIFTRSPTDSDDSTLSVLALNLILTVVVASALRVVEQLSLTLEPSMENLEKYLEDYVSEKPFALLLDYDGTLAAIQPHPNLTYMTDYTKEALLNISSRSNIFLSIISGRGVDDVRRKVDIDGIIYAGNHGLEILYPNGTRYIHEVPADVRDNFTAMVASLEKINRDGSWVENKKFSVTFHYRAVPEKDYDKIRDEAKEIIERHGYRANQAHCAIEAKPPVVWHKGKAAEYILDHSFGKDWRENIQVLFAGDDTTDEDVFELLQGVGITFRVTQDPNVVTKATYKVPSTDSVTKILQWVDKKFTKK
| Type | Start | End | Length |
| CDS |
19442 |
19587 |
146 |
| CDS |
19650 |
19683 |
34 |
| CDS |
19750 |
19998 |
249 |
| CDS |
20067 |
20133 |
67 |
| CDS |
20190 |
20558 |
369 |
| CDS |
20731 |
20776 |
46 |
| CDS |
20860 |
20917 |
58 |
| intron |
19588 |
19649 |
62 |
| intron |
19684 |
19749 |
66 |
| intron |
19999 |
20066 |
68 |
| intron |
20134 |
20189 |
56 |
| intron |
20559 |
20730 |
172 |
| intron |
20777 |
20859 |
83 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAH28883 |
trehalose-6-phosphate phosphatase [Polypedilum vanderplanki] dbj|BAH28888.1| trehalose-6-phosphate phosphatase [Polypedilum vanderplanki] |
1e-143 |
| InterPro |
IPR006379 |
HAD-superfamily hydrolase, subfamily IIB |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| InterPro |
IPR003337 |
Trehalose-phosphatase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0005992 |
trehalose biosynthetic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF02358.11 |
Trehalose-phosphatase |
5.9e-41 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10180 |
| A. aegypti |
AAEL010684 |
| D. melanogaster |
FBgn0031907 |
| C. quinquefasciatus |
CPIJ801658 |
| A. gambiae |
AGAP008225 |