MidgeBase gene description page [Pn.05016]
Outline
| Gene ID | Pn.05016 |
| Type | Protein coding gene |
| Scaffold | PnScaf4313 |
| Start | 12941 |
| End | 18089 |
| Direction | + |
Sequence
Transcript: 2517 (bp)
ATGACGAACGAAAGTGACCCCAAGCATGAACCGGAAATAACGGTGACGGCGGCTGAGCCGACTCCCAAAAGCAAGCTCATCGTCGTCTCCAATCGCCTGCCGTTTGTGCTCAAGAAGGATATCAGCGGAAAAATGTTCCGTCAGGCGAGTGCTGGCGGACTCGTAACGGCCGTCGCGCCCGTCGTCATCAAAGGCAAGGGCCAATGGGTCGGCTGGCCGGGCATCCACTTGCCGGCGGACTTCGACGACTCGCAGATTCCCGAATCGGATCCCGCTGACCAAACTCCAACGGCTGGTCTAAAGTCGGAGCAAGTGGTGACAGTGAACATGAATCCAGATCTCTTCGAAGCCTACTACAACGGCTGCTGCAACGGCACGCACTGGCCTCTCTTCCACTCGATGCCTGGTCGTGCCATTTTCTCGACTGATCACTGGCGCGCTTATGTTGCCGCCAACGTGCTCTTCGCTGATAAGACGATCGAAGCCATCGAGCGGTGCACGCGAAACGGCGGCCCCCCGCCCATCGTCTGGATCCACGACTACCACCTTATGCTGTGCGCCAACTACATCCGCGAGAAGGCCGAGGAGAAGAACCTCGAGATGCAGCTCGCCTTCTTCCTCCACATCCCGTTCCCGCCATGGGACATCTTCCGCCTCTTCCCGTGGTCCGACGAAATCCTCCAGGGCATGCTCGCCTGCGACATGGTCGGTTTCCACATCCGCGACTACTGCATCAACTTCGTCGACTGCTGCCAGCGCAATCTCGGCTGCCGCGTCGACCGCAAGAATCTCCTCGTCGAGCATGGCGGTCGATCGGTGCGCGTCCGTCCGCTGCCGATTGGCATTCCCTTCGACCGATTCGTCGAGTTGGCGACTAACGCGAAAAAGGTCATCAAGACGAAGCAGAAGGTCATTTTGGGAGTCGATCGTCTCGACTACACCAAAGGCTTGGTTAATCGCCTCAAGGCGTTCGAGATTCTGCTCGAAAAGCACCCGGAGCATCGTGGCACCGTCAGTTTTCTGCAAATTTCCGTGCCATCACGTACGGACGTGCTCGAGTATCAGCAGCTGAAGGAGGAGATGGACCAGCTTGTCGGTCGCATCAACGGTCGCTTCTCCACGGCTGTTTGGGCCCCAATTCGCTACATCTTCGGGTGCGTTGGTCAAAGCGAACTCGCCGCCTACTATCGCGATGCGGCAGTCGCTCTCGTCACACCGTTGCGCGACGGCATGAATCTTGTCGCGAAGGAGTTTGTCGCTTGCCAAATCAACGAGCCGCCAGGCGTTCTCATTGTCAGTCCTTTCGCCGGTGCCGGTGAGACGATGCACGAGGCGCTCTTGTGCAATCCGTACGAGATCGGTGCCGCCGCTGAGGTTATTCATCGCGCACTCACGATGCCAGAGGATGAGCGCTCGCTGCGCATGAGTCGTTTGCGTCGCCGCGAGATGGACAACGACGTCAACTTCTGGATGCGCTCGTTCATGAAGGCCATGGGCTCCGACATCGAGCAGGACGAAATTGGCACCACGAGCCTGCAGCCCGTGACCATCGACGACTTTGACGATTACTTATTGAACTACATCGGCTACTCGCACAAGCTCGCACTGCTGCTCGATTACGACGGAACTCTGTCGCCGATCGCACCGCATCCCGACCTGGCCACTCTCCCGCCCGAAACGAAGAATGTCTTGCAACGGCTGAGCAACCTCTCCGACGTCTACATCGCCATCATTTCAGGACGTGGCGTCGAAAATGTGAAGAACATGGTCGGCATCGAGGGCATCACCTATGCCGGCAACCACGGACTGGAGATTTTGCATCCGGACGGCAGCAAATTCGTTCACCCGATGCCGATCGAGTACGAGGAGAAGGTCAGCAAGTTGCTGCGCGCTCTGCAAGACTCTGTCTGCCACGACGGAGCCTGGGTTGAGAACAAAGGAGCACTCTTGACCTTCCATTATCGTGATACACCGAACGAAATGCGTCCGCAGATGATTGACAAGGCGCGATTCCTCATGGAGCACTTCGGATTCACTGCGAGCGAGTCGCTGTGCGCTCTCGAAGCGAAGCCGCCAGTTCCATGGAACAAAGGTCGCGCCTCGATCTACATTCTTCGCACTGCCTTCGGCGTCGACTGGAGCGAGAGAATCAAGATCATCTACGCTGGTGACGACGTCACCGACGAGGACGCCATGATGGCTTTGCGCGGTATGGCGGCGACATTCCGCATCGCCAGCTCCAACATAATCAAGACTGCAGCCGAGCGTCGTCTGCCATCGACAGATTCCGTCCTCACCATGCTGAAATGGATCGAGCGACACTTCATGAACAAGCGACCGCGAAAGATCTCAAACAACCAACGACCGAAGAAGGTGTCGTCGTACACCAACCAGAACAGCATCGGCTTCCCCATACACATGTCCTTCGATCTGACAACCAGTCCTTCGCGGTCGCCACGAAGCTCCCCGCTGCCCAGTCCGTGCTACAGTCCCGAGAACAGCAGCAGCGAGGAGGCT
Protein: 839 (aa)
MTNESDPKHEPEITVTAAEPTPKSKLIVVSNRLPFVLKKDISGKMFRQASAGGLVTAVAPVVIKGKGQWVGWPGIHLPADFDDSQIPESDPADQTPTAGLKSEQVVTVNMNPDLFEAYYNGCCNGTHWPLFHSMPGRAIFSTDHWRAYVAANVLFADKTIEAIERCTRNGGPPPIVWIHDYHLMLCANYIREKAEEKNLEMQLAFFLHIPFPPWDIFRLFPWSDEILQGMLACDMVGFHIRDYCINFVDCCQRNLGCRVDRKNLLVEHGGRSVRVRPLPIGIPFDRFVELATNAKKVIKTKQKVILGVDRLDYTKGLVNRLKAFEILLEKHPEHRGTVSFLQISVPSRTDVLEYQQLKEEMDQLVGRINGRFSTAVWAPIRYIFGCVGQSELAAYYRDAAVALVTPLRDGMNLVAKEFVACQINEPPGVLIVSPFAGAGETMHEALLCNPYEIGAAAEVIHRALTMPEDERSLRMSRLRRREMDNDVNFWMRSFMKAMGSDIEQDEIGTTSLQPVTIDDFDDYLLNYIGYSHKLALLLDYDGTLSPIAPHPDLATLPPETKNVLQRLSNLSDVYIAIISGRGVENVKNMVGIEGITYAGNHGLEILHPDGSKFVHPMPIEYEEKVSKLLRALQDSVCHDGAWVENKGALLTFHYRDTPNEMRPQMIDKARFLMEHFGFTASESLCALEAKPPVPWNKGRASIYILRTAFGVDWSERIKIIYAGDDVTDEDAMMALRGMAATFRIASSNIIKTAAERRLPSTDSVLTMLKWIERHFMNKRPRKISNNQRPKKVSSYTNQNSIGFPIHMSFDLTTSPSRSPRSSPLPSPCYSPENSSSEEA
| Type | Start | End | Length |
| CDS |
12941 |
13089 |
149 |
| CDS |
14345 |
14402 |
58 |
| CDS |
14481 |
14585 |
105 |
| CDS |
14691 |
14784 |
94 |
| CDS |
15195 |
15884 |
690 |
| CDS |
16128 |
16608 |
481 |
| CDS |
16944 |
17271 |
328 |
| CDS |
17339 |
17469 |
131 |
| CDS |
17539 |
17701 |
163 |
| CDS |
17769 |
18086 |
318 |
| intron |
13090 |
14344 |
1255 |
| intron |
14403 |
14480 |
78 |
| intron |
14586 |
14690 |
105 |
| intron |
14785 |
15194 |
410 |
| intron |
15885 |
16127 |
243 |
| intron |
16609 |
16943 |
335 |
| intron |
17272 |
17338 |
67 |
| intron |
17470 |
17538 |
69 |
| intron |
17702 |
17768 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
BAH28884 |
trehalose-6-phosphate synthase alpha [Polypedilum vanderplanki] dbj|BAH28886.1| trehalose-6-phosphate synthase alpha [Polypedilum vanderplanki] |
0.0 |
| InterPro |
IPR006379 |
HAD-superfamily hydrolase, subfamily IIB |
|
| InterPro |
IPR001830 |
Glycosyl transferase, family 20 |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| InterPro |
IPR003337 |
Trehalose-phosphatase |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0005992 |
trehalose biosynthetic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00982.16 |
Glycosyltransferase family 20 |
2.6e-131 |
| Pfam |
PF00534.15 |
Glycosyl transferases group 1 |
1.6e-05 |
| Pfam |
PF08323.6 |
Starch synthase catalytic domain |
0.17 |
| Pfam |
PF02358.11 |
Trehalose-phosphatase |
3.9e-34 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10178 |
| A. mellifera |
GB12797-PA |
| H. melpomene |
HMEL006784-PA |
| T. castaneum |
TC007883 |
| A. gambiae |
AGAP008227 |
| B. mori |
BGIBMGA005182-TA |
| D. plexippus |
DPOGS212595PA |
| N. vitripennis |
NV13394-PA |
| D. melanogaster |
FBgn0027560 |
| S. invicta |
SI2.2.0_13123 |
| P. humanus |
PHUM612040-PA |
| A. aegypti |
AAEL006446 |
| C. quinquefasciatus |
CPIJ801662 |