MidgeBase gene description page [Pn.04996]
Outline
| Gene ID | Pn.04996 |
| Type | Protein coding gene |
| Scaffold | PnScaf4273 |
| Start | 20938 |
| End | 23915 |
| Direction | - |
Sequence
Transcript: 1893 (bp)
ATGAGACACTGCAAAGGCAGGAGCTCTCTTATCAAGCTAATCATCAACTTCACAATCGTTGGCTGTGTGTGTGTCTTCCTCCTCTCGCAATTGTATAAACAGAGCTCGCAGTCGTCGAGCGGCGACGACAACGAGGCGCTGCCGAACGCCGAGCACCGAATTGGCGAGAAGGCGACGTTCAAGAAGCGGCCGATCGTTTTACCGCTAATCGAAGAAGATGACTTCCACTACATCGAGCCGAAAGACTCGTTCTTCCGGCAGAAGCACAACGTGCTGATGAAAAGAAAAGACTGGCACGACTACGAGCACATAAAGATGGAGAAGAGCCGGAAGGGACCGGGCGAGCAGGGACAGTCCTTTCGCCTCTCCGATCCGCACGACATTGAGCTCAACAATCAGCTGCTGAAGGTCAACGGCTACTGGGCGCGCGCCTCCGACATCATCTCCGTCAATCGATCCGTCAACGACATTCGGCATCCGCTTTGCCAGCAGAAGAAGTATCTGCTCGAGCTGCCCACAGCATCGGTCATCATTCCCTTCTTCAACGACCATCTGTCGGTGCTCATGCGAACCGTCCACAGCTGCTTCAACCGTGCACCGGCGCATCTGCTGAAGGAGGTCATTCTGGTCAACGATCACTCCACCAAGGAGGAGCTCTACGACGAACTCAAAGCCTACTTGGCCGAAAACTTCGAGGGAAAGGCACACGTCGTTGATCTTCCGCGACGCTCGGGTCTCATCACTGCACGTCTCGCTGGTGCCAGAGTTGCGACCGGCGATGTTCTGATCTTCTTGGACTCGCACACCGAAGCAAACACCAACTGGCTGCCGCCTCTTCTTGACCCAATCGCGTCGGATTATCGGACGTGTGTGTGCCCGTTCATTGACGTTATCGATGCGCAAGACTACCAGTACCGAGCGCAAGATGAAGGCAATCGAGGTGCCTTCGAGTGGAACTTTTTGTACAAAAGAATCGACATCAGACCGGGAGATCAAGAAACGCCGGCCGACAATTTTCCATCGCCCGTTATGGCCGGCGGTTTGTTTGCAATTTCCGCGAAATTCTTCTGGGAACTCGGCGGCTACGATCCTGGTCTCGACATTTGGGGAGGCGAGCAGTACGAGCTGAGCTTCAAGATTTGGTTGTGCGGCGGTCAAATGGTGGATTCACCATGCAGTCGAATCGGTCACATTTACAAAAGCAATCCATTCCCCGATCCCAGAGGTTACGACTACGTCTCGAAGAACTTCAAGCGAGTCGCCGAGGTGTGGATGGACGAGTACAAGGAGTACATTTACCAGCGCAAGCCAGACAGATTTTCACGCGTCGACACCGGCGACATTTCGAAGCAGCTCGAAATCAAGAAGAAGAACAAGTGCAAGCCGTTCAGCTACTTCCTCGAAGTCGTCGCTCCCGACATGCTCGAAAAGTACCCGCCTACTCAGATCGAGTTCGCCAGCGGCGTTATCGAGAGCGTCGCGTTCAGCGACTACTGCATCGACTCGATGGGCCAGTTCTACCACCATCTCGGCCTCTACCGGTGCTCGCACAACAAGAAGCACCCGTCGGGTCATCAGCACTTCTTCCTCGGCCATAACCGAGACATCGAGTTCTACTCGGACGCCGCCTACTGCATCGACTCGTACGGCTCGAACATCCGGCTCGCGGCGTGCCATCACAAGCAGGGCCAGCAGTATTTCCGCTACGATCCCGACACGCAGCACATCTACAGTCAGCCGGACGAGAAGAAGTGCCTGGAGGCGGACTCCTCGCAGCAGCGGATCGTCGTCAAGCGCTGCGACGGCAGCGAAGTGAAGCAAAAGTGGACGTGGGGACACATCAACGAGGACAATCTCAGACACTGGGAGGAGCGCGGCGCAAAGATCATGCAC
Protein: 631 (aa)
MRHCKGRSSLIKLIINFTIVGCVCVFLLSQLYKQSSQSSSGDDNEALPNAEHRIGEKATFKKRPIVLPLIEEDDFHYIEPKDSFFRQKHNVLMKRKDWHDYEHIKMEKSRKGPGEQGQSFRLSDPHDIELNNQLLKVNGYWARASDIISVNRSVNDIRHPLCQQKKYLLELPTASVIIPFFNDHLSVLMRTVHSCFNRAPAHLLKEVILVNDHSTKEELYDELKAYLAENFEGKAHVVDLPRRSGLITARLAGARVATGDVLIFLDSHTEANTNWLPPLLDPIASDYRTCVCPFIDVIDAQDYQYRAQDEGNRGAFEWNFLYKRIDIRPGDQETPADNFPSPVMAGGLFAISAKFFWELGGYDPGLDIWGGEQYELSFKIWLCGGQMVDSPCSRIGHIYKSNPFPDPRGYDYVSKNFKRVAEVWMDEYKEYIYQRKPDRFSRVDTGDISKQLEIKKKNKCKPFSYFLEVVAPDMLEKYPPTQIEFASGVIESVAFSDYCIDSMGQFYHHLGLYRCSHNKKHPSGHQHFFLGHNRDIEFYSDAAYCIDSYGSNIRLAACHHKQGQQYFRYDPDTQHIYSQPDEKKCLEADSSQQRIVVKRCDGSEVKQKWTWGHINEDNLRHWEERGAKIMH
| Type | Start | End | Length |
| CDS |
20941 |
21366 |
426 |
| CDS |
21437 |
21637 |
201 |
| CDS |
21740 |
21912 |
173 |
| CDS |
22002 |
22154 |
153 |
| CDS |
22237 |
22335 |
99 |
| CDS |
22422 |
22780 |
359 |
| CDS |
22852 |
23324 |
473 |
| CDS |
23907 |
23915 |
9 |
| intron |
21367 |
21436 |
70 |
| intron |
21638 |
21739 |
102 |
| intron |
21913 |
22001 |
89 |
| intron |
22155 |
22236 |
82 |
| intron |
22336 |
22421 |
86 |
| intron |
22781 |
22851 |
71 |
| intron |
23325 |
23906 |
582 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847550 |
N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] gb|EDS26410.1| N-acetyl galactosaminyl transferase 6 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR000772 |
Ricin B lectin domain |
|
| InterPro |
IPR001173 |
Glycosyl transferase, family 2 |
|
| Pfam |
PF02709.9 |
N-terminal domain of galactosyltransferase |
6.2e-08 |
| Pfam |
PF13641.1 |
Glycosyltransferase like family 2 |
4.4e-07 |
| Pfam |
PF00535.21 |
Glycosyl transferase family 2 |
5.7e-27 |
| Pfam |
PF10111.4 |
Glycosyltransferase like family 2 |
3.1e-06 |
| Pfam |
PF00652.17 |
Ricin-type beta-trefoil lectin domain |
7e-19 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.04997 |
| Pn.09558 |
| Pn.09847 |
| Pn.16548 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000415210 |
| D. melanogaster |
FBgn0035375 |
| P. vanderplanki |
Pv.15015 |
| P. vanderplanki |
Pv.11250 |
| A. mellifera |
GB16591-PA |
| P. vanderplanki |
Pv.00112 |
| H. sapiens |
ENSP00000423313 |
| C. quinquefasciatus |
CPIJ013573 |
| P. humanus |
PHUM055320-PA |
| A. aegypti |
AAEL000654 |
| H. sapiens |
ENSP00000366889 |
| A. aegypti |
AAEL000646 |
| A. gambiae |
AGAP012414 |
| P. vanderplanki |
Pv.11251 |
| H. sapiens |
ENSP00000423827 |
| M. musculus |
ENSMUSG00000096914 |
| A. aegypti |
AAEL000639 |
| A. gambiae |
AGAP011984 |
| H. sapiens |
ENSP00000366885 |
| D. melanogaster |
FBgn0051956 |
| M. musculus |
ENSMUSG00000020520 |
| P. vanderplanki |
Pv.12130 |
| S. invicta |
SI2.2.0_13249 |
| A. gambiae |
AGAP010367 |
| D. plexippus |
DPOGS214688PA |
| P. vanderplanki |
Pv.05911 |
| H. sapiens |
ENSP00000297107 |
| B. mori |
BGIBMGA001064-TA |
| C. quinquefasciatus |
CPIJ013569 |
| C. quinquefasciatus |
CPIJ005231 |
| N. vitripennis |
NV50068-PA |
| T. castaneum |
TC008338 |
| H. melpomene |
HMEL017723-PA |
| C. quinquefasciatus |
CPIJ005229 |