MidgeBase gene description page [Pn.04992]
Outline
| Gene ID | Pn.04992 |
| Type | Protein coding gene |
| Scaffold | PnScaf4273 |
| Start | 1982 |
| End | 5756 |
| Direction | + |
Sequence
Transcript: 3723 (bp)
ATGCCCGCACGCTCCGAAGATCTAGCGAATGACACGCGACGTAACAGCGCGGTGCCCTCATCCGTGATGGACCTAGACACGAATGAGCGTCACTTCGCACAGCCGCCGCGCGTCGTTCAGGACGACATCTGCATCACAGGCTTCAGCGGTCGTCTGCCCGAGAGCTCCAGCATCGAGGAGTTCAAGCGGAACCTCTTCGACGGCGTCGACATGGTGAACGACGATCCGCGCCGGTGGGCGGCGGGCCTGCACGACCTGCCCACGCGCACCGGCAAAATCAAAACCGAGGACCTGCAGAACCTCGACGCCGCCTTCTTCAAGCTCCACCAGAAGCAGGCCGAGTGCATGGACCCGCAACTCCGCATGCTCCTCGAGTGCACCTACGAGGCCATCGTCGATGCCGGCATCAACCCGCAGGACATCCGCGGCTCGCGCACCGGCGTCTACGTCGGCGTCTCCAACTCGGACAGCGAGGAGTTCTGGTGCCGCGACCCCGACGTCGTCAACGGCTACGGCCTCACCGGATGTGCGCGCTCCATGTTCGCCAACCGCATCTCCTTCACGTTCGACTTCAAGGGCCCGAGCTATGCCGTCGACACGGCCTGCTCCTCATCGCTCTTCGCCATGGACCACGCGTTCAGGGACATCAAGTCGGGCCGCACCGATGCCGCCATTGTCGCCGGCGTCGGGCTCATCTTCAAGCCGACCATGTCGCTGCAGTTCAAGCGCCTGAACATGCTCAGCCCGGACGGAATGTGCAAGGCCTTCGACGAGAGCGGCAACGGCTACGTCCGCTCCGACGGCTGCGTCGTGACCTTCCTGCAAAAGTCGAAGGACTCGCGTCGCATCTACGCGACCGTGCTGAACGTCCGCACGAACACGGACGGCGCCAAGGACCAGGGCATCACGTTCCCGAACGGACAGATGCAGAACCGGCTGATTCGCGAGACCTACGAGGAGATCGGCCTCGATCCGCGCGAAGTCACGTACGTGGAGGCGCACGGGACGGGAACGAAGGTCGGCGACCCGCAGGAGGTCAACTCGATCTGCGACTTCTTCTGCAAGGACCGCTCGACGCCGCTCCTCATTGGCAGCGTGAAGTCGAACATGGGACACTCGGAGCCGGCGTCGGGCGTGTGCTCGGTCGCGAAAATCCTCATCGCTATGGAGGCGGGCATGATTCCCGCCAATTTGCACTTCAAAAACCCCAATCCCGACCTCTACGGCATCATGGACGGACGAATGAAGGTCGTCGACAAGAACACGCCGTGGAGTGGCGGCATTGTCGGCCTCAACAGCTTCGGCTTCGGCGGCGCCAACGCCCACGTCATCCTCAAGTCCAACCCGAAGCCGAAGGCGATCGGCTCGATCGGCGAAATACCTCGACTCGTCGCCTGTTCGGGACGCACCGAGGAAGCGGTGGAGCAGCTTTTGGCCGAAATCGAGGCTAATCGCAACGACGAGGAGTTTCTCGGCCTCATCAACGAGATCCATGCGAAGAACATTCCGATGCACCATTTCCGCGGCTACACGGTGATGGGAGCCGACGGCAGCAACCAGCGCGAGGTTGGCGAGCTGCGCGACGATAAGCGCCCGGTGTGGTTCGTCTACTCGGGCATGGGCAGCCAGTGGGCGAGTATGGCGCGCGAGATGATGCGCGTCGACGTCTTCCGGCAAGCGATCACAAAATGCGCCGACGTGCTGAAACCGGAGGGCGTCGATCTCATCGACATCCTCACCAAGTCGGACGAGGCGCGCTTCGACAACATCCTCAACTCTTTCGTGTCGATTGCGGCCGTGCAGGTCGCGCTCACGGACGTCCTCACGAGTGTCGGCATCAGCCCTGACGGCATGGTAGGCCACTCGGTCGGCGAACTCGGCTGCGCCTATGCCGACGGCTGCTTCACCGCGGAGCAGACCGTGCTGGCCGCGTACTGGAGAGGCCGCTCCATCCTCGACACCGACCTCATCGCCGGCCAGATGGCGGCCGTCGGTCTCAGCTGGGAGGACTGCCAGAAGCGCCTTCCGAAGGACGTCATTGCGGCGTGCCACAACGGCGCCGACAGCGTCACCATCTCCGGGCCGGTCGCGTCGGTCGAGAGGGTCGTGAAGGAGCTGACGGCGGAGGGCATTTTCGCGAAGGCGGTCAAGTCGAGCGGAATCGCCTTCCACAGCAAGTACATCGCCGAGGCGGCGCCGAAGCTGAGAAAGTCCCTCGACAAGATCATCCCGACGCCGAAGGCGCGCTCGGAGCGATGGATCAGCTCCTCGATTCCCGAGTCCGCGTGGTCCGCGCCACTCGCCATGCACAGCTCCTCCGCCTACCACGTCAACAACTTGCTCTCGCCGGTGCTCTTTCACTCGGCCATCCAGCACGTCCCGAGCAACGCGATCTGCGTCGAAATCGCCCCGCACGGCTTGCTGCAGGCCATTCTGAAGCGCTCGCTCGGCACCGACTGCACCAACATCAGTCTCATGAAGCGACAGCATGCCGACAACGTGCTGTTTATGCTGTCGAATGTCGGCAAGCTCTACGCCGCCGGCGCGCAGCCGCAACTGTCGAAGCTCTACCGGCCGGTGACCTTCCCGGTCGGTCGCTCCACTCCGATGCTCAGCTCGAAGGTCGGCTGGGATCACTCGCAAAAGTGGATTCTCCTGGACGTGGGCGGCGAGAGCTCGGGCGAGACTGTTGTCGAGGTGAATTTGGGCAAAGAGGGCGACGCCTTCCTCGCCGGTCACGCCATCGACGGCCGCGTGCTCTTCCCGGCCACCGGCTACATGACGCTCGCGTGGAAGACCTTCGCGAAAATGAAGGGAACGACCCACGACCGACTGCCGGTGGTGCTCGAGAATGTCGTGTTCCATCGTGCGACCATTCTGCCGAAGGACGGATCCGTGAAGTTCGGGCTGAACTTCTTCGATGGCAGCGGGAGGTTTGAGATCTGTGAGGGCGGCTCGCTGGCCGTCTCGGGAACGATCCGAGTGCCCGAGAGCATCGAGAGCGAGGAGCTCCCGCTCGATCCGATCGACTGTGACACGAAGTCGGGGCTGCTGCTGGAGCGCGGCGACATTTACAAGGAGCTGAGACTGCGCGGCTACGACTACGGCGGACTTTTCCGCGGCATCAACAAGAGCGACTCGCGCGCGAACGCCGGCGAGCTCGAGTGGACCGGCAACTGGGTGAGCTTCATGGACACGATGCTGCAGTTCTCGATCCTGGGCAAGGACCTGCGCGAGCTCTACCTGCCGACGAGAATCGAGCGAGTCGTGCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACCGTCCTCGAGAACAGCGGCGGTGCGCTGAAGCTGAAAGTGGTCGAGTACCTCGACGACCGGCTTGCCGAGTCGAGCAACTCGCTGCTCATCCAGAGCGTCGTCGAGAGCGAGCCGACGCTGGCGAGCGACGTCGCAATCGTCACCGTTCTGAAGCCCGACACCTACCAAAACTTTGTCGGCGAGTCGGGCGTGCGTGTGGTCGTGAAGGACGCCACGAAGGGACCGGTCGAGAGCAACTCGTCCTCGCAAACC
Protein: 1241 (aa)
MPARSEDLANDTRRNSAVPSSVMDLDTNERHFAQPPRVVQDDICITGFSGRLPESSSIEEFKRNLFDGVDMVNDDPRRWAAGLHDLPTRTGKIKTEDLQNLDAAFFKLHQKQAECMDPQLRMLLECTYEAIVDAGINPQDIRGSRTGVYVGVSNSDSEEFWCRDPDVVNGYGLTGCARSMFANRISFTFDFKGPSYAVDTACSSSLFAMDHAFRDIKSGRTDAAIVAGVGLIFKPTMSLQFKRLNMLSPDGMCKAFDESGNGYVRSDGCVVTFLQKSKDSRRIYATVLNVRTNTDGAKDQGITFPNGQMQNRLIRETYEEIGLDPREVTYVEAHGTGTKVGDPQEVNSICDFFCKDRSTPLLIGSVKSNMGHSEPASGVCSVAKILIAMEAGMIPANLHFKNPNPDLYGIMDGRMKVVDKNTPWSGGIVGLNSFGFGGANAHVILKSNPKPKAIGSIGEIPRLVACSGRTEEAVEQLLAEIEANRNDEEFLGLINEIHAKNIPMHHFRGYTVMGADGSNQREVGELRDDKRPVWFVYSGMGSQWASMAREMMRVDVFRQAITKCADVLKPEGVDLIDILTKSDEARFDNILNSFVSIAAVQVALTDVLTSVGISPDGMVGHSVGELGCAYADGCFTAEQTVLAAYWRGRSILDTDLIAGQMAAVGLSWEDCQKRLPKDVIAACHNGADSVTISGPVASVERVVKELTAEGIFAKAVKSSGIAFHSKYIAEAAPKLRKSLDKIIPTPKARSERWISSSIPESAWSAPLAMHSSSAYHVNNLLSPVLFHSAIQHVPSNAICVEIAPHGLLQAILKRSLGTDCTNISLMKRQHADNVLFMLSNVGKLYAAGAQPQLSKLYRPVTFPVGRSTPMLSSKVGWDHSQKWILLDVGGESSGETVVEVNLGKEGDAFLAGHAIDGRVLFPATGYMTLAWKTFAKMKGTTHDRLPVVLENVVFHRATILPKDGSVKFGLNFFDGSGRFEICEGGSLAVSGTIRVPESIESEELPLDPIDCDTKSGLLLERGDIYKELRLRGYDYGGLFRGINKSDSRANAGELEWTGNWVSFMDTMLQFSILGKDLRELYLPTRIERVVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLENSGGALKLKVVEYLDDRLAESSNSLLIQSVVESEPTLASDVAIVTVLKPDTYQNFVGESGVRVVVKDATKGPVESNSSSQT
| Type | Start | End | Length |
| CDS |
1982 |
5690 |
3709 |
| CDS |
5740 |
5753 |
14 |
| intron |
5691 |
5739 |
49 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001658180 |
fatty acid synthase [Aedes aegypti] gb|EAT47728.1| fatty acid synthase [Aedes aegypti] |
0.0 |
| InterPro |
IPR014031 |
Beta-ketoacyl synthase, C-terminal |
|
| InterPro |
IPR016035 |
Acyl transferase/acyl hydrolase/lysophospholipase |
|
| InterPro |
IPR014030 |
Beta-ketoacyl synthase, N-terminal |
|
| InterPro |
IPR014043 |
Acyl transferase |
|
| InterPro |
IPR020807 |
Polyketide synthase, dehydratase domain |
|
| InterPro |
IPR020801 |
Polyketide synthase, acyl transferase domain |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| InterPro |
IPR018201 |
Beta-ketoacyl synthase, active site |
|
| InterPro |
IPR020841 |
Polyketide synthase, beta-ketoacyl synthase domain |
|
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR001227 |
Acyl transferase domain |
|
| InterPro |
IPR016036 |
Malonyl-CoA ACP transacylase, ACP-binding |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0016740 |
transferase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00109.21 |
Beta-ketoacyl synthase, N-terminal domain |
7.5e-68 |
| Pfam |
PF00698.16 |
Acyl transferase domain |
2.7e-72 |
| Pfam |
PF00108.18 |
Thiolase, N-terminal domain |
0.0036 |
| Pfam |
PF02801.17 |
Beta-ketoacyl synthase, C-terminal domain |
1.2e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02651 |
| Pn.11656 |
| Pn.06426 |
| Pn.03933 |
| Pn.04187 |
| Pn.11493 |
| Pn.08717 |
| Pn.06151 |
| Pn.15816 |
| Pn.00600 |
| Pn.01298 |
| Pn.14865 |
| Pn.04993 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.14921 |
| B. mori |
BGIBMGA008581-TA |
| B. mori |
BGIBMGA013153-TA |
| S. invicta |
SI2.2.0_01047 |
| S. invicta |
SI2.2.0_07564 |
| D. plexippus |
DPOGS212360PA |
| C. quinquefasciatus |
CPIJ008367 |
| A. aegypti |
AAEL002237 |
| S. invicta |
SI2.2.0_11351 |
| P. vanderplanki |
Pv.12209 |
| P. vanderplanki |
Pv.14772 |
| A. aegypti |
AAEL002204 |
| P. vanderplanki |
Pv.01475 |
| D. melanogaster |
FBgn0040001 |
| S. invicta |
SI2.2.0_11327 |
| S. invicta |
SI2.2.0_10014 |
| S. invicta |
SI2.2.0_00900 |
| S. invicta |
SI2.2.0_08502 |
| S. invicta |
SI2.2.0_00383 |
| S. invicta |
SI2.2.0_15127 |
| S. invicta |
SI2.2.0_12057 |
| S. invicta |
SI2.2.0_13910 |
| S. invicta |
SI2.2.0_14664 |
| P. vanderplanki |
Pv.10571 |
| N. vitripennis |
NV22399-PA |
| N. vitripennis |
NV10926-PA |
| P. vanderplanki |
Pv.02828 |
| P. vanderplanki |
Pv.12689 |
| B. mori |
BGIBMGA013046-TA |
| P. vanderplanki |
Pv.03372 |
| A. aegypti |
AAEL008160 |
| S. invicta |
SI2.2.0_06311 |
| S. invicta |
SI2.2.0_14684 |
| P. vanderplanki |
Pv.00511 |
| P. vanderplanki |
Pv.16863 |
| P. vanderplanki |
Pv.14617 |
| N. vitripennis |
NV14455-PA |
| P. vanderplanki |
Pv.00790 |
| S. invicta |
SI2.2.0_05482 |
| A. mellifera |
GB12198-PA |
| P. vanderplanki |
Pv.14852 |
| T. castaneum |
TC007689 |
| C. quinquefasciatus |
CPIJ005595 |
| P. vanderplanki |
Pv.02964 |
| P. vanderplanki |
Pv.02965 |
| A. aegypti |
AAEL002227 |
| P. vanderplanki |
Pv.05860 |
| T. castaneum |
TC015399 |
| D. plexippus |
DPOGS206960PA |
| H. melpomene |
HMEL005305-PA |
| B. mori |
BGIBMGA008582-TA |
| A. aegypti |
AAEL002228 |
| S. invicta |
SI2.2.0_15862 |
| S. invicta |
SI2.2.0_06588 |
| B. mori |
BGIBMGA004655-TA |
| N. vitripennis |
NV17124-PA |
| A. mellifera |
GB16883-PA |
| T. castaneum |
TC015340 |
| S. invicta |
SI2.2.0_10115 |
| T. castaneum |
TC015339 |
| S. invicta |
SI2.2.0_13311 |
| H. melpomene |
HMEL008318-PA |
| S. invicta |
SI2.2.0_16052 |
| N. vitripennis |
NV10927-PA |
| H. melpomene |
HMEL015510-PA |
| N. vitripennis |
NV10111-PA |
| S. invicta |
SI2.2.0_14578 |
| S. invicta |
SI2.2.0_13320 |
| P. vanderplanki |
Pv.14263 |
| M. musculus |
ENSMUSG00000025153 |
| B. mori |
BGIBMGA013047-TA |
| B. mori |
BGIBMGA008579-TA |
| H. melpomene |
HMEL015513-PA |
| P. vanderplanki |
Pv.10570 |
| T. castaneum |
TC000238 |
| P. vanderplanki |
Pv.12440 |
| P. vanderplanki |
Pv.10251 |
| A. gambiae |
AGAP009176 |
| P. vanderplanki |
Pv.02966 |
| A. aegypti |
AAEL001194 |
| N. vitripennis |
NV14456-PA |
| A. gambiae |
AGAP008468 |
| S. invicta |
SI2.2.0_00168 |
| C. quinquefasciatus |
CPIJ003494 |
| B. mori |
BGIBMGA008602-TA |
| S. invicta |
SI2.2.0_09698 |
| B. mori |
BGIBMGA013281-TA |
| S. invicta |
SI2.2.0_01792 |
| P. vanderplanki |
Pv.00897 |
| P. vanderplanki |
Pv.00898 |
| P. vanderplanki |
Pv.07928 |
| S. invicta |
SI2.2.0_16094 |
| H. melpomene |
HMEL004144-PA |
| S. invicta |
SI2.2.0_15874 |
| D. melanogaster |
FBgn0042627 |
| B. mori |
BGIBMGA013151-TA |
| P. vanderplanki |
Pv.11254 |
| T. castaneum |
TC015400 |
| H. sapiens |
ENSP00000304592 |
| D. plexippus |
DPOGS207082PA |
| A. gambiae |
AGAP001899 |
| C. quinquefasciatus |
CPIJ003495 |
| S. invicta |
SI2.2.0_02241 |
| T. castaneum |
TC015337 |
| S. invicta |
SI2.2.0_06292 |
| S. invicta |
SI2.2.0_05241 |
| D. melanogaster |
FBgn0027571 |
| T. castaneum |
TC011522 |
| S. invicta |
SI2.2.0_14661 |
| S. invicta |
SI2.2.0_03932 |
| S. invicta |
SI2.2.0_08063 |
| N. vitripennis |
NV50551-PA |
| P. vanderplanki |
Pv.09028 |
| P. humanus |
PHUM080440-PA |
| A. aegypti |
AAEL002200 |
| P. humanus |
PHUM448390-PA |
| P. humanus |
PHUM565830-PA |
| P. vanderplanki |
Pv.03790 |