MidgeBase gene description page [Pn.04988]
Outline
| Gene ID | Pn.04988 |
| Type | Protein coding gene |
| Scaffold | PnScaf4271 |
| Start | 26328 |
| End | 29461 |
| Direction | - |
Sequence
Transcript: 2460 (bp)
ATGTATTTTATTGCAATTATACTATGTTCACTAGTGTTGGCTGTAATAAATGGCAATAATAACATAAGCTGCCATCCCCTCGCGAGGGATGCCGGCGTGAGTTCTAGAAATTTAAGAAATACGTCTCTTTTCGACGACAAAATACAGCCAGTGACGATTAACGATAAGTACAATGCCTACAGTGATAACAGTGATTATGACGAAAGTACACTAAATATCAGAGAATCCCTCGAAACGTCACCCGAACCTCCTTACCAACAGCTATACACCGACCACGATGATGGTCCCACATACAACGTCTACGAGTCCACCGACGACGATCCGACGTGCATTCTAGCGCGCTCCGAATTTTACCTGTCGTGGTGGGTGAACGAGAACGGGAGCCTGCGCGTGCCCACATTCAACAGGCTCAACACGTCGGGCATTCTCGATTTATCTCTGCAATTCGACTCCGAAAGTCGGCTCTTTCAGCACGTTCTGAACTTCACGAGCGACAACCCGAATGATGTGATAAGATTTATGAGCGTCGCAAACAATAAGTTAGACTCGATACCGGCGTCTGTGCTAAATCTCACCAGCGCAACGATCCAGTATCTGTCGCTGGCGGGCAATAACTTTTACGGCATGTTCGAATATGAAAACACAACATTTCAGGACTTTACATCGTTTCCACTGATGATGCAGCTCCTCGAGCTCGACTTGCGCAGCTGTCACATCACGAGCTTCTCGGCCGGCTACTTCGACAACCTGCCGAAACTGGACAAACTCTTTCTCTCGCACAATCACTTTCTCGTGGTGAAGGCGGAGGCCTTTGAGCCGCTCAAGCTGCTCCGCCACCTCGACATAAGCTACAACACGGTGGCGGAAGATGCGAAGGATCGGACTGACGGCATGATCTTGGAGGAGGCTCTCTTCAAGTCCATGGACCAGCTGATGTTTCTCGACCTCTCGCACTCGCCGCTGAGCAGACGCAGCATGCAGGCGTTTAAGTCACTCGGCCCCGAAATGAAGCAGCTGTCGCTGTGCTACACTGGCATAACGAGCTTCGAGGAGAACATGTTTGCGAATACGTCGCTCAACGTGATCGACCTGAGCGGCAATCCGGACCTCGCCGACAACATAAGCGCCGAGGACTTCGAGAGCGTCGAGGACACGCTCGAGATTTTCGTGTTTCGCGATGGCAACGTGAAGGACTTTAAGCTCACGTCGTCGCTGAAGAAGCTTCGGATGTTGGACTTCCGCAGCAACAATGTCACCTCGCTGAGGAAGAAGGATTTCGACGAGCTGCCGGATCTGGAGATTTTGGACCTCGGACTGAACCACATCATCAACTGGTACGAACGCGTCTTCACCGACAACCGGAAGCTGAGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCTGGCCATCGGCTCAAATGACTTTGTGTGCGCGTGCAACCTTCGCGATTTCATCGATCGAGCGACACGCAACGCCCTCTACCACTACTGCTCGGATCGGAAGCGAAAGAAGAGGTCGATCGAGAGCAGCATCAACTGGAATAGCCCCGAGCACCAGTACAACGTGTTTCTCCGAGAGTTCAGCACGGTGGTGGCCTTCTACGAGGAGAGCTATCGAAACATGCTGATAAGTGCCGCTCCGCAGCCGGAATTCGAGGGCTCGGGCGAGAGCGGAGCGAAGCATAGTTACAAGGGACTCTCGACGTTCAGCGAACGCGACTGCTACAGCTTCGACCGCGACAAAATCACGCACATGAACTTCAACTTTCTCCTGTTGGACTACAACGAGAACGAGTACAAGTGCATTGAAGAGAACTTCGGCTACCAGACCGAGCGGCGGGTGCACTTCAACCAGGTGCAGTCGTGCTTCAGCGACATAGACAGGGAATCGACGGAGCCATACGACGGCAGCTCCGACGACGAGTCGAACGAGGAAATCACTGAAGATCCCGGCCAGACGACCACGGAGCCTTCGATCGAAGAAACGACCACCAAGAGCCCGGTCTACAGGCCACTGATGGAGGCTTTCGAGGTGTACTATCTCTACCTCCTCCTTATCATCCCGGTGTCGCTGATTATCGGCTTATGGCTGTGGAAGCGATCGGACATAAAACTAATCGAAACACGACGAGAGCAGTTGATTCTCGTGCTTTTACAAGACATTCCGCGTTCTCGGAGGACGCGAACCTTGCAGTTTTTGATGCGTACAAAGACTTACATCATGTGGCCTTCCGAAGACAAAGAAGAGTCCAAGGCGATGTTCTGGAAGCGACTGCGAAAGGCCATCGTGCTCACCAACTGGGAGCCGGACAAGAAAGTCAGTAAACCACGACATAGTATTGTA
Protein: 820 (aa)
MYFIAIILCSLVLAVINGNNNISCHPLARDAGVSSRNLRNTSLFDDKIQPVTINDKYNAYSDNSDYDESTLNIRESLETSPEPPYQQLYTDHDDGPTYNVYESTDDDPTCILARSEFYLSWWVNENGSLRVPTFNRLNTSGILDLSLQFDSESRLFQHVLNFTSDNPNDVIRFMSVANNKLDSIPASVLNLTSATIQYLSLAGNNFYGMFEYENTTFQDFTSFPLMMQLLELDLRSCHITSFSAGYFDNLPKLDKLFLSHNHFLVVKAEAFEPLKLLRHLDISYNTVAEDAKDRTDGMILEEALFKSMDQLMFLDLSHSPLSRRSMQAFKSLGPEMKQLSLCYTGITSFEENMFANTSLNVIDLSGNPDLADNISAEDFESVEDTLEIFVFRDGNVKDFKLTSSLKKLRMLDFRSNNVTSLRKKDFDELPDLEILDLGLNHIINWYERVFTDNRKLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAIGSNDFVCACNLRDFIDRATRNALYHYCSDRKRKKRSIESSINWNSPEHQYNVFLREFSTVVAFYEESYRNMLISAAPQPEFEGSGESGAKHSYKGLSTFSERDCYSFDRDKITHMNFNFLLLDYNENEYKCIEENFGYQTERRVHFNQVQSCFSDIDRESTEPYDGSSDDESNEEITEDPGQTTTEPSIEETTTKSPVYRPLMEAFEVYYLYLLLIIPVSLIIGLWLWKRSDIKLIETRREQLILVLLQDIPRSRRTRTLQFLMRTKTYIMWPSEDKEESKAMFWKRLRKAIVLTNWEPDKKVSKPRHSIV
| Type | Start | End | Length |
| CDS |
26331 |
26562 |
232 |
| CDS |
26921 |
28496 |
1576 |
| CDS |
28672 |
28816 |
145 |
| CDS |
28955 |
29461 |
507 |
| intron |
26563 |
26920 |
358 |
| intron |
28497 |
28671 |
175 |
| intron |
28817 |
28954 |
138 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001985023 |
GH16825 [Drosophila grimshawi] gb|EDV97371.1| GH16825 [Drosophila grimshawi] |
2e-51 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR000157 |
Toll/interleukin-1 receptor homology (TIR) domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
1.3e-24 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
4.4e-20 |
| Pfam |
PF01582.15 |
TIR domain |
1e-05 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
0.0039 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
4e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0036978 |
| P. vanderplanki |
Pv.10740 |
| C. quinquefasciatus |
CPIJ006515 |
| D. plexippus |
DPOGS205123PA |
| H. melpomene |
HMEL006338-PA |
| A. aegypti |
AAEL011734 |
| A. aegypti |
AAEL014896 |
| A. aegypti |
AAEL013441 |
| A. gambiae |
AGAP006974 |
| P. humanus |
PHUM006690-PA |
| B. mori |
BGIBMGA011216-TA |
| C. quinquefasciatus |
CPIJ006150 |
| P. vanderplanki |
Pv.02383 |